Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 8.7e-80 300.4 173 100.0
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.6e-57 226.5 175 79.4
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.9e-50 203.0 174 73.6
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.2e-49 200.3 176 75.6
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 8.7e-48 194.1 180 68.9
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 1.9e-47 193.0 180 68.9
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 5.7e-47 191.4 181 71.3
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 4.1e-45 185.3 180 68.9
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 5.3e-45 184.9 178 69.1
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 6.9e-45 184.5 184 67.9
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.2e-44 183.7 167 72.5
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 7.7e-44 181.0 180 67.8
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.7e-43 179.9 173 57.2
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 1.7e-43 179.9 180 68.9
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.1e-42 177.2 184 66.3
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.1e-42 177.2 192 68.8
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 3.2e-42 175.6 173 57.8
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 3.2e-42 175.6 173 57.8
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 9.4e-42 174.1 182 58.2
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-41 172.9 194 63.4
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 2.7e-41 172.6 179 64.8
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-40 169.9 190 61.1
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-40 169.9 190 62.1
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 3.0e-40 169.1 192 63.0
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 5.1e-40 168.3 171 57.3
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 5.1e-40 168.3 171 57.3
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 5.1e-40 168.3 171 57.3
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 6.7e-40 167.9 184 65.2
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 6.7e-40 167.9 185 62.7
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.5e-39 166.0 180 65.0
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 4.3e-39 165.2 197 59.4
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 7.4e-39 164.5 199 60.3
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 7.4e-39 164.5 199 60.3
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 2.2e-38 162.9 205 59.5
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-38 162.5 174 65.5
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 1.1e-37 160.6 203 58.1
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 1.1e-37 160.6 174 65.5
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-37 160.2 179 63.7
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.8e-37 159.8 188 61.2
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.8e-37 159.8 183 61.2
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-36 157.1 174 64.4
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-35 153.7 174 65.5
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 2.9e-35 152.5 198 58.1
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 1.1e-34 150.6 176 52.8
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 1.4e-34 150.2 212 55.7
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 1.6e-33 146.7 176 50.6
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 2.7e-33 146.0 188 51.1
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 8.8e-32 141.0 180 51.1
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 2.6e-31 139.4 184 45.7
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 1.3e-30 137.1 162 50.0
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.3e-30 137.1 182 49.5
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 6.3e-30 134.8 186 53.2
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 8.2e-30 134.4 203 47.3
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.1e-29 134.0 180 49.4
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.4e-29 133.7 184 50.5
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 3.1e-29 132.5 194 43.8
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 4.1e-29 132.1 184 48.9
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 5.3e-29 131.7 173 50.9
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 7.0e-29 131.3 197 48.7
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 9.1e-29 131.0 182 42.9
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.0e-28 129.8 191 42.9
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 2.6e-28 129.4 190 43.2
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.5e-28 129.0 187 47.1
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 5.9e-28 128.3 190 45.8
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.0e-27 127.5 203 49.3
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 2.2e-27 126.3 180 46.7
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 2.9e-27 125.9 162 59.9
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 2.9e-27 125.9 162 59.9
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 2.9e-27 125.9 192 42.7
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 2.9e-27 125.9 186 51.6
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 3.8e-27 125.6 190 48.4
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 8.5e-27 124.4 190 40.0
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 3.2e-26 122.5 188 42.6
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 5.5e-26 121.7 161 57.8
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 5.5e-26 121.7 161 57.8
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 5.5e-26 121.7 218 38.5
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.2e-25 120.6 187 53.5
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 1.6e-25 120.2 194 47.4
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.1e-25 119.8 211 45.5
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.1e-25 119.8 211 45.5
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 2.7e-25 119.4 216 44.0
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 3.6e-25 119.0 207 46.9
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.0e-24 117.5 137 51.1
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.4e-24 117.1 194 46.9
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 1.8e-24 116.7 191 44.0
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.8e-24 116.7 189 38.1
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.3e-24 116.3 196 45.9
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 2.3e-24 116.3 195 50.3
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.0e-24 115.9 179 50.8
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.0e-24 115.9 197 45.2
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.0e-24 115.9 187 40.6
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 4.0e-24 115.5 195 43.6
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 5.2e-24 115.2 189 50.8
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 5.2e-24 115.2 185 45.9
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 5.2e-24 115.2 185 45.9
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 8.8e-24 114.4 178 51.1
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 8.8e-24 114.4 130 49.2
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 1.1e-23 114.0 199 48.7
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.5e-23 113.6 207 45.9
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 2.0e-23 113.2 202 46.5
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 2.0e-23 113.2 192 49.5
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.6e-23 112.8 198 37.4
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 3.3e-23 112.5 209 42.6
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 4.4e-23 112.1 200 45.0
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 5.7e-23 111.7 182 41.8
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 5.7e-23 111.7 211 45.0
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 7.5e-23 111.3 188 51.1
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 9.7e-23 110.9 192 45.8
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.3e-22 110.5 209 39.2
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.3e-22 110.5 210 43.3
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.3e-22 110.5 203 42.9
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 1.7e-22 110.2 179 45.8
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.8e-22 109.4 171 40.4
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 3.7e-22 109.0 226 34.5
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 3.7e-22 109.0 192 50.0
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 3.7e-22 109.0 194 40.7
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 3.7e-22 109.0 187 49.7
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 6.3e-22 108.2 197 36.5
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 8.2e-22 107.8 129 59.7
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 8.2e-22 107.8 185 39.5
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 8.2e-22 107.8 196 49.5
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.1e-21 107.5 196 46.9
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.4e-21 107.1 175 42.9
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.4e-21 107.1 192 45.3
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 1.8e-21 106.7 196 49.5
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 2.4e-21 106.3 182 46.2
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.1e-21 105.5 199 46.7
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.1e-21 105.5 195 43.6
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 5.3e-21 105.1 184 40.2
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 7.0e-21 104.8 182 37.9
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 9.1e-21 104.4 173 42.8
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 9.1e-21 104.4 186 53.2
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.6e-20 103.6 221 34.4
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 2.0e-20 103.2 202 43.6
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 2.6e-20 102.8 183 45.4
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 2.6e-20 102.8 195 47.7
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 2.6e-20 102.8 178 40.4
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.5e-20 102.4 229 42.4
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 4.5e-20 102.1 217 37.3
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 4.5e-20 102.1 212 34.4
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 5.9e-20 101.7 180 51.1
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 7.7e-20 101.3 164 42.1
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.0e-19 100.9 237 40.5
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.0e-19 100.9 224 31.7
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 2.2e-19 99.8 166 47.6
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 2.2e-19 99.8 205 38.0
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 2.9e-19 99.4 162 55.6
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 2.9e-19 99.4 213 36.2
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 5.0e-19 98.6 174 38.5
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 1.5e-18 97.1 237 39.2
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.5e-18 97.1 166 44.0
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.5e-18 96.3 205 44.4
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 9.4e-18 94.4 176 49.4
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.2e-17 94.0 99 77.8
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 1.6e-17 93.6 141 41.1
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 8.8e-16 87.8 234 31.6
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 1.5e-15 87.0 224 35.7
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.5e-15 87.0 218 40.8
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 2.2e-11 73.2 195 32.3
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 2.9e-11 72.8 183 29.0
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.8e-11 72.4 111 46.8
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 5.0e-11 72.0 141 32.6
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.5e-11 71.6 217 30.0
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 8.5e-11 71.2 116 38.8
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.2e-10 69.3 150 44.0
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 7.2e-10 68.2 150 43.3
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.1e-09 66.6 146 42.5
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.1e-09 66.6 161 30.4
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.0e-08 64.3 167 31.7
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.0e-08 62.8 171 27.5
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.0e-07 60.1 162 29.0
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.8e-06 56.2 210 25.2
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 6.3e-06 55.1 41 63.4


User provided reference genes

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