Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 3.1e-92 342.0 207 100.0
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 2.2e-66 256.1 205 67.8
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 2.6e-62 242.7 209 70.8
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 4.8e-61 238.4 209 62.2
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 4.8e-61 238.4 209 62.2
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 4.1e-60 235.3 209 61.7
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 9.1e-60 234.2 207 66.7
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 2.0e-59 233.0 206 73.8
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 4.5e-59 231.9 207 60.9
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 1.7e-58 229.9 209 62.2
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 5.0e-58 228.4 207 60.4
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 2.5e-57 226.1 210 63.3
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 2.5e-57 226.1 209 60.8
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 5.5e-57 224.9 209 60.3
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 2.1e-56 223.0 209 59.3
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 1.4e-55 220.3 205 68.3
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 8.8e-55 217.6 209 63.2
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 1.7e-50 203.4 208 61.5
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 6.5e-50 201.4 208 61.1
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 1.5e-49 200.3 213 53.1
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 9.9e-22 107.8 156 42.9
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 2.2e-21 106.7 160 38.8
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 4.9e-21 105.5 185 41.1
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 6.4e-21 105.1 165 41.8
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 2.4e-20 103.2 184 39.7
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 2.4e-20 103.2 159 39.0
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 2.4e-20 103.2 218 33.0
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 4.1e-20 102.4 164 40.2
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 5.4e-20 102.1 191 37.2
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 9.2e-20 101.3 213 35.2
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 9.2e-20 101.3 160 40.6
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 9.2e-20 101.3 156 41.0
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 9.2e-20 101.3 158 38.6
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.2e-19 100.9 213 34.7
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 1.3e-18 97.4 160 35.6
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 1.7e-18 97.1 161 39.1
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 2.3e-18 96.7 197 35.0
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 2.3e-18 96.7 198 34.8
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 3.0e-18 96.3 192 35.9
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 3.9e-18 95.9 185 34.6
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 3.9e-18 95.9 202 32.7
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 6.6e-18 95.1 164 37.8
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.1e-17 94.4 177 35.6
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 2.5e-17 93.2 194 35.6
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 3.3e-17 92.8 160 38.8
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 5.6e-17 92.0 176 33.5
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 9.5e-17 91.3 211 33.2
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 9.5e-17 91.3 177 35.0
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 1.2e-16 90.9 174 33.3
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 1.2e-16 90.9 204 32.4
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.6e-16 90.5 177 34.5
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 2.1e-16 90.1 198 33.3
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 4.7e-16 89.0 214 31.3
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 8.1e-16 88.2 161 37.3
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 1.1e-15 87.8 183 34.4
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.1e-15 87.8 213 31.0
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 1.1e-15 87.8 161 37.9
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.8e-15 87.0 160 36.9
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 4.0e-15 85.9 187 34.2
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 4.0e-15 85.9 155 38.1
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 8.9e-15 84.7 180 32.2
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 2.6e-14 83.2 218 31.7
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 3.4e-14 82.8 220 29.5
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 9.9e-14 81.3 220 31.8
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 2.2e-13 80.1 155 35.5
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 2.9e-13 79.7 108 47.2
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 2.9e-13 79.7 163 33.7
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 3.8e-13 79.3 161 37.3
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 4.9e-13 79.0 175 31.4
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 4.9e-13 79.0 181 33.1
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 1.1e-12 77.8 164 30.5
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 2.4e-12 76.6 159 36.5
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 2.4e-12 76.6 152 34.2
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 3.2e-12 76.3 61 62.3
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 4.2e-12 75.9 192 40.6
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 4.2e-12 75.9 92 38.0
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 4.2e-12 75.9 194 27.8
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 5.4e-12 75.5 66 56.1
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 7.1e-12 75.1 116 41.4
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 7.1e-12 75.1 92 38.0
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 9.2e-12 74.7 98 40.8
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 9.2e-12 74.7 68 55.9
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 1.6e-11 73.9 162 32.7
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 1.6e-11 73.9 84 44.0
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 2.7e-11 73.2 183 30.6
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 2.7e-11 73.2 169 32.0
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 2.7e-11 73.2 170 31.8
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 6.0e-11 72.0 199 29.1
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 6.0e-11 72.0 62 53.2
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 6.0e-11 72.0 153 30.1
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.0e-10 71.2 64 51.6
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 1.3e-10 70.9 76 42.1
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 1.3e-10 70.9 200 28.0
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 1.3e-10 70.9 83 41.0
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 2.3e-10 70.1 152 34.9
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 3.9e-10 69.3 65 44.6
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 5.1e-10 68.9 62 51.6
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 5.1e-10 68.9 159 30.8
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 6.6e-10 68.6 72 47.2
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 8.7e-10 68.2 108 36.1
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.5e-09 67.4 99 43.4
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 1.5e-09 67.4 99 43.4
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 1.9e-09 67.0 171 31.6
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 2.5e-09 66.6 62 50.0
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 3.3e-09 66.2 157 33.8
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 3.3e-09 66.2 64 51.6
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 5.6e-09 65.5 72 40.3
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 9.6e-09 64.7 63 47.6
Glyma.11G251800 Glycine max HOM05D006962 ORTHO05D008696 1.4e-07 60.8 51 58.8
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.8e-07 60.5 58 51.7
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 4.0e-07 59.3 109 39.4


User provided reference genes

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