Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 5.5e-59 230.7 113 100.0
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 2.2e-47 192.2 118 82.2
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 5.0e-44 181.0 118 78.8
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 5.5e-43 177.6 118 78.0
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 2.1e-42 175.6 119 76.5
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 1.0e-41 173.3 120 74.2
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 1.4e-38 162.9 120 70.8
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 2.4e-38 162.2 120 71.7
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 2.4e-38 162.2 120 71.7
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 9.1e-38 160.2 114 73.7
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 6.5e-36 154.1 120 69.2
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 1.1e-35 153.3 118 71.2
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 1.1e-35 153.3 118 71.2
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 1.9e-35 152.5 120 68.3
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 2.3e-28 129.0 110 64.5
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 2.9e-28 128.6 110 64.5
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 5.0e-28 127.9 113 61.9
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 5.0e-28 127.9 111 63.1
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 8.6e-28 127.1 110 63.6
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 1.1e-27 126.7 114 59.6
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 2.8e-26 122.1 119 55.5
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 6.1e-26 120.9 115 58.3
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 5.2e-25 117.9 113 56.6
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 5.7e-24 114.4 114 54.4
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 5.7e-24 114.4 114 54.4
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 7.5e-24 114.0 114 53.5
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 6.4e-23 110.9 112 51.8
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 6.4e-23 110.9 112 51.8
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 1.6e-21 106.3 101 60.4
BolC5t31202H Brassica oleracea HOM05D000085 ORTHO05D000274 3.0e-20 102.1 94 61.7
BcaC08g43155 Brassica carinata HOM05D007408 ORTHO05D009325 6.6e-20 100.9 111 55.9
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 1.6e-18 96.3 104 53.8
BcaC05g26644 Brassica carinata HOM05D007408 ORTHO05D009325 6.8e-17 90.9 87 58.6
BraA09t39474Z Brassica rapa HOM05D000085 ORTHO05D000274 7.5e-16 87.4 86 59.3
Thhalv10019756m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 2.4e-14 82.4 67 61.2
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 7.0e-14 80.9 114 44.7
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 9.2e-14 80.5 114 40.4
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 1.6e-13 79.7 116 42.2
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 1.6e-13 79.7 113 44.2
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 2.7e-13 79.0 116 42.2
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 3.5e-13 78.6 121 37.2
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 4.6e-13 78.2 117 44.4
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 7.8e-13 77.4 115 42.6
BcaC08g45945 Brassica carinata HOM05D000085 ORTHO05D000274 1.0e-12 77.0 77 59.7
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 1.3e-12 76.6 117 39.3
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 3.9e-12 75.1 121 38.8
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 3.9e-12 75.1 114 36.8
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 5.0e-12 74.7 114 43.0
BcaC08g45936 Brassica carinata HOM05D000085 ORTHO05D000274 5.0e-12 74.7 76 59.2
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 5.0e-12 74.7 114 43.0
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 5.0e-12 74.7 114 43.0
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 5.0e-12 74.7 126 38.9
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 8.6e-12 73.9 114 42.1
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 1.1e-11 73.6 113 39.8
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 1.1e-11 73.6 114 40.4
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 1.1e-11 73.6 114 40.4
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 1.1e-11 73.6 114 40.4
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 1.1e-11 73.6 114 40.4
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 1.1e-11 73.6 116 39.7
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 1.5e-11 73.2 121 37.2
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 1.5e-11 73.2 118 42.4
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.5e-11 73.2 113 38.9
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 1.9e-11 72.8 114 41.2
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.9e-11 72.8 113 40.7
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.9e-11 72.8 113 40.7
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.9e-11 72.8 113 40.7
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 1.9e-11 72.8 130 33.8
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 1.9e-11 72.8 131 36.6
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 2.5e-11 72.4 114 40.4
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 3.3e-11 72.0 121 38.8
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 4.3e-11 71.6 114 40.4
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 4.3e-11 71.6 113 40.7
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 5.6e-11 71.2 131 35.9
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 5.6e-11 71.2 128 32.8
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 5.6e-11 71.2 111 33.3
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 9.5e-11 70.5 114 36.8
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 1.2e-10 70.1 114 37.7
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 1.2e-10 70.1 117 35.0
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 1.6e-10 69.7 121 33.9
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 2.8e-10 68.9 140 35.7
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 2.8e-10 68.9 112 41.1
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 6.2e-10 67.8 114 39.5
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 8.1e-10 67.4 125 36.0
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.8e-09 66.2 128 34.4
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 1.8e-09 66.2 128 34.4
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 2.3e-09 65.9 128 35.9
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 2.3e-09 65.9 121 37.2
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 6.8e-09 64.3 116 37.1
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 8.9e-09 63.9 117 34.2
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 1.2e-08 63.5 119 33.6
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 1.2e-08 63.5 64 48.4
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 2.0e-08 62.8 122 33.6
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 2.0e-08 62.8 129 34.9
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 4.4e-08 61.6 114 36.8
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 5.8e-08 61.2 143 32.2
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 9.9e-08 60.5 116 34.5
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 9.9e-08 60.5 116 34.5
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 1.7e-07 59.7 114 37.7
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 3.7e-07 58.5 145 31.7
Thhalv10019564m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 4.9e-07 58.2 46 63.0
HPP92_003100 Vanilla planifolia HOM05D007408 ORTHO05D009325 1.4e-06 56.6 62 46.8
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 1.9e-06 56.2 47 53.2
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 2.4e-06 55.8 122 32.8
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 3.2e-06 55.5 119 31.9
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 3.2e-06 55.5 127 31.5
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 5.4e-06 54.7 102 36.3
HPP92_003114 Vanilla planifolia HOM05D007408 ORTHO05D009325 7.1e-06 54.3 106 34.0


User provided reference genes

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