Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.4e-96 356.3 188 100.0
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 5.9e-82 307.8 191 87.4
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.2e-79 300.1 193 85.0
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.3e-76 290.0 195 81.0
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.1e-75 287.0 197 80.2
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 2.7e-74 282.3 195 79.5
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 2.2e-73 279.3 192 79.7
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 6.5e-73 277.7 194 77.3
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 6.5e-73 277.7 192 79.2
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 8.5e-73 277.3 192 78.6
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.6e-71 273.1 192 77.6
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.5e-69 266.5 188 77.7
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 7.5e-69 264.2 210 71.0
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 3.7e-68 261.9 188 75.0
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 1.2e-66 256.9 192 73.4
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 1.6e-66 256.5 192 72.9
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 4.5e-66 255.0 181 76.8
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 7.7e-66 254.2 192 71.4
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.0e-65 253.8 192 72.9
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 1.3e-65 253.4 194 72.2
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.3e-65 253.4 188 72.9
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 5.0e-65 251.5 192 71.4
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 1.9e-64 249.6 190 71.6
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 3.2e-64 248.8 192 69.3
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 7.2e-64 247.7 167 79.0
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 9.5e-64 247.3 184 71.7
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 9.5e-64 247.3 164 78.7
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 1.6e-63 246.5 189 72.0
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.1e-63 246.1 189 74.1
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.1e-63 246.1 192 70.3
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 2.8e-63 245.7 192 68.8
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 2.8e-63 245.7 188 72.3
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 3.6e-63 245.4 190 70.0
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 3.6e-63 245.4 191 68.6
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 6.1e-63 244.6 192 70.8
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 6.1e-63 244.6 189 69.3
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 6.1e-63 244.6 186 70.4
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 8.0e-63 244.2 190 70.5
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.0e-62 243.8 190 72.1
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 1.0e-62 243.8 190 68.9
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.4e-62 243.4 186 69.4
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.4e-62 243.4 192 70.3
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 1.8e-62 243.0 186 69.4
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 1.8e-62 243.0 191 68.1
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 3.0e-62 242.3 190 67.4
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 4.0e-62 241.9 188 67.6
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 4.0e-62 241.9 192 67.7
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 4.0e-62 241.9 196 67.9
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 5.2e-62 241.5 192 66.7
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 6.8e-62 241.1 189 69.3
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 6.8e-62 241.1 192 66.7
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.2e-61 240.4 186 68.8
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.2e-61 240.4 184 70.1
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 1.5e-61 240.0 191 68.6
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 1.5e-61 240.0 188 67.0
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 1.5e-61 240.0 191 67.0
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 2.6e-61 239.2 198 66.7
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 2.6e-61 239.2 197 66.0
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 3.4e-61 238.8 175 73.7
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 4.4e-61 238.4 190 66.8
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 4.4e-61 238.4 156 77.6
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 5.7e-61 238.0 189 68.8
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 5.7e-61 238.0 190 66.8
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 5.7e-61 238.0 188 70.7
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 7.5e-61 237.7 186 67.7
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 2.8e-60 235.7 186 71.0
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 3.7e-60 235.3 186 68.3
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 4.9e-60 235.0 192 65.6
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 6.3e-60 234.6 186 67.2
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 6.3e-60 234.6 189 67.2
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 6.3e-60 234.6 187 67.9
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 6.3e-60 234.6 187 67.9
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 1.4e-59 233.4 164 72.6
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 1.8e-59 233.0 159 74.8
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.8e-59 233.0 185 65.9
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 2.4e-59 232.6 176 69.3
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 3.1e-59 232.3 185 65.4
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.0e-59 231.1 200 65.5
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 7.0e-59 231.1 186 66.1
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.2e-58 230.3 204 61.8
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.6e-58 229.9 178 67.4
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 1.6e-58 229.9 203 63.5
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 1.6e-58 229.9 203 63.5
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 2.0e-58 229.6 164 70.7
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.8e-58 227.6 186 66.7
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 7.8e-58 227.6 166 69.3
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 1.7e-57 226.5 196 63.8
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 1.7e-57 226.5 160 72.5
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 2.3e-57 226.1 186 65.1
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 5.0e-57 224.9 186 64.5
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 8.6e-57 224.2 192 64.1
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 8.6e-57 224.2 193 64.2
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 8.6e-57 224.2 183 67.8
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 1.1e-56 223.8 174 67.2
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.5e-56 223.4 182 67.6
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.9e-56 223.0 188 64.9
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 2.5e-56 222.6 178 65.2
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 3.3e-56 222.2 188 62.8
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 3.3e-56 222.2 171 68.4
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 4.3e-56 221.9 173 66.5
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 7.3e-56 221.1 192 62.5
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 7.3e-56 221.1 186 62.9
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 9.5e-56 220.7 191 61.3
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 1.6e-55 219.9 154 74.7
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 1.6e-55 219.9 159 72.3
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 2.1e-55 219.5 162 69.1
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 2.1e-55 219.5 188 62.2
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 4.7e-55 218.4 165 67.3
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 6.1e-55 218.0 179 64.8
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 1.8e-54 216.5 183 63.4
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 2.3e-54 216.1 173 65.9
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 2.3e-54 216.1 187 62.6
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 8.9e-54 214.2 188 61.7
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 2.9e-52 209.1 169 65.1
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 6.4e-52 208.0 154 74.0
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 2.4e-51 206.1 159 67.9
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 2.4e-51 206.1 195 60.0
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 2.0e-50 203.0 186 59.7
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 4.6e-50 201.8 192 56.8
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 1.0e-49 200.7 169 62.1
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.1e-47 193.0 194 58.2
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 2.1e-47 193.0 163 60.7
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 4.7e-47 191.8 258 47.7
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 1.8e-46 189.9 186 57.0
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 2.6e-45 186.0 168 60.1
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 2.2e-44 183.0 156 59.0
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 2.4e-43 179.5 180 57.2
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 3.2e-43 179.1 145 62.1
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 1.6e-42 176.8 165 58.2
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 5.6e-40 168.3 112 74.1
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 2.8e-39 166.0 234 47.4
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.1e-38 162.5 105 76.2
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 5.2e-38 161.8 156 52.6
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 8.9e-38 161.0 192 52.1
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.5e-37 160.2 135 63.7
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 2.0e-37 159.8 192 51.6
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 2.6e-37 159.5 127 64.6
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 9.9e-37 157.5 91 83.5
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 4.9e-36 155.2 156 53.2
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 3.2e-35 152.5 159 52.8
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.1e-35 152.1 154 54.5
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 5.4e-35 151.8 120 65.8
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.3e-33 147.1 130 59.2
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.3e-33 147.1 129 59.7
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.3e-33 147.1 130 59.2
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 3.0e-33 146.0 145 50.3
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 8.6e-33 144.4 130 59.2
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.1e-32 144.1 183 47.5
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.1e-32 144.1 130 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.8e-31 139.4 175 43.4
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 1.1e-30 137.5 82 78.0
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.4e-30 137.1 171 43.3
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 1.5e-29 133.7 122 58.2
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.0e-21 106.7 119 52.9
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 3.0e-17 92.8 86 59.3
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 3.9e-17 92.4 182 37.9
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 8.1e-15 84.7 79 64.6
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 6.9e-14 81.6 58 63.8
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.1e-08 64.3 103 48.5
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 4.0e-06 55.8 43 62.8
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 9.0e-06 54.7 167 32.3


User provided reference genes

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