Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.3e-265 918.3 450 100.0
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 9.3e-235 816.6 468 86.1
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 6.7e-233 810.4 468 85.3
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 8.7e-233 810.1 469 85.5
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.1e-232 809.7 469 85.7
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 5.3e-230 800.8 470 86.4
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.3e-228 796.2 470 84.5
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-227 792.3 470 84.0
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 1.9e-227 792.3 470 84.0
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-226 789.3 470 84.0
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.0e-225 786.6 470 83.8
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-225 785.4 470 83.8
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 6.7e-225 783.9 472 83.7
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 4.8e-223 777.7 469 81.9
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 2.6e-221 771.9 469 81.2
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 6.5e-220 767.3 469 81.2
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 5.2e-209 731.1 468 79.3
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 5.7e-208 727.6 467 76.9
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 2.7e-197 692.2 469 75.1
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 8.6e-196 687.2 443 77.4
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-195 686.4 438 78.1
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 8.3e-191 670.6 389 84.8
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 9.2e-190 667.2 465 68.4
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 2.9e-188 662.1 469 72.5
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 7.5e-176 620.9 467 65.1
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 9.8e-176 620.5 465 66.5
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.7e-175 619.8 439 68.8
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 5.4e-174 614.8 441 66.4
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 9.2e-174 614.0 466 64.4
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 2.1e-173 612.8 466 64.2
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-173 612.8 438 73.1
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 3.5e-173 612.1 441 66.2
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 3.9e-172 608.6 467 64.5
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 2.5e-171 605.9 459 63.2
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 1.2e-170 603.6 467 63.0
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.2e-170 603.6 437 66.6
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.1e-169 600.5 438 65.5
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 2.3e-169 599.4 463 62.4
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 2.3e-169 599.4 438 65.3
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 6.8e-169 597.8 459 64.5
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.2e-168 597.0 437 65.2
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 1.5e-168 596.7 459 63.8
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.5e-168 596.7 437 65.2
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.4e-168 595.5 437 65.0
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 7.5e-168 594.3 437 65.7
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.9e-167 592.4 468 62.6
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 4.1e-166 588.6 467 61.9
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 1.6e-165 586.6 438 64.6
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 6.0e-165 584.7 438 64.8
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.7e-164 583.2 467 61.9
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 3.0e-164 582.4 438 65.1
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.6e-164 581.3 437 64.3
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 1.1e-163 580.5 466 60.9
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 2.5e-163 579.3 417 65.5
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 9.5e-163 577.4 437 63.8
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 9.5e-163 577.4 466 60.9
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.2e-162 577.0 437 63.2
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 4.7e-162 575.1 438 62.3
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 6.2e-162 574.7 488 59.6
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.4e-161 572.8 467 60.2
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 3.1e-161 572.4 413 65.6
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.0e-161 572.0 437 63.8
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 1.2e-160 570.5 437 62.7
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 1.5e-160 570.1 460 61.5
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 7.6e-160 567.8 466 59.9
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.2e-159 566.2 466 59.2
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.9e-158 563.1 491 59.5
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 7.1e-158 561.2 468 59.0
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 7.1e-158 561.2 438 62.6
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 9.2e-158 560.8 437 62.0
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.2e-157 560.5 468 58.5
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 1.6e-157 560.1 457 60.8
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 2.1e-157 559.7 440 61.6
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 7.8e-157 557.8 438 61.0
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.7e-156 556.6 459 60.8
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.7e-156 556.6 438 61.9
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 3.0e-156 555.8 438 62.1
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 3.0e-156 555.8 467 59.1
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 3.9e-156 555.4 437 61.1
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 1.5e-155 553.5 467 57.2
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 2.5e-155 552.7 439 62.4
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 2.5e-155 552.7 438 60.5
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 3.3e-155 552.4 474 57.8
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 5.6e-155 551.6 388 69.1
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 7.3e-155 551.2 468 58.1
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 1.6e-154 550.1 439 60.6
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 6.2e-154 548.1 440 59.8
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.8e-153 546.6 469 57.6
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 2.4e-153 546.2 467 57.0
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 3.1e-153 545.8 439 60.6
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 6.9e-153 544.7 439 60.1
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 1.5e-152 543.5 439 60.6
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 7.6e-152 541.2 468 57.3
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.2e-149 533.9 438 59.6
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 6.0e-149 531.6 438 59.6
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 3.3e-147 525.8 418 60.8
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.1e-145 520.8 435 60.0
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.8e-145 520.0 364 68.7
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 9.9e-144 514.2 440 56.4
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 4.9e-143 511.9 427 59.5
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 1.4e-142 510.4 411 60.8
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.4e-142 510.4 390 63.3
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.9e-142 510.0 439 58.3
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 1.9e-142 510.0 437 57.7
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 9.3e-142 507.7 467 55.2
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.5e-139 500.4 436 55.0
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 7.4e-139 498.0 438 56.4
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.5e-131 473.8 466 50.4
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 2.5e-131 473.0 352 63.9
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 3.7e-130 469.2 470 51.9
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 3.7e-130 469.2 431 52.2
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 4.8e-130 468.8 419 54.7
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 2.0e-128 463.4 479 53.2
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 2.2e-127 459.9 439 51.0
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 1.0e-124 451.1 464 48.9
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 6.7e-124 448.4 490 49.0
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 2.5e-123 446.4 468 51.7
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 6.5e-119 431.8 343 63.6
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 5.9e-112 408.7 483 46.4
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 2.9e-111 406.4 431 49.2
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.7e-109 399.8 421 50.6
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 2.6e-96 356.7 225 79.1
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 1.9e-94 350.5 441 43.3
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 3.3e-78 296.6 317 55.2
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 4.2e-78 296.2 412 40.0
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.6e-72 277.7 409 39.1
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.2e-69 268.1 267 50.9
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.5e-67 261.2 189 67.7
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 4.1e-65 253.1 248 54.0
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.2e-61 241.5 196 60.2
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 9.2e-57 225.3 171 64.3
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 1.6e-56 224.6 171 64.3
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 2.7e-56 223.8 202 57.4
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 9.5e-54 215.3 199 55.3
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 4.7e-53 213.0 147 66.0
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 1.3e-50 204.9 423 36.4
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 2.0e-43 181.0 145 69.0
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 3.8e-42 176.8 145 66.9
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 1.6e-37 161.4 110 68.2
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 4.8e-37 159.8 213 46.9
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 3.1e-36 157.1 156 51.9
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 8.4e-34 149.1 152 58.6
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.1e-33 148.7 115 65.2
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 1.4e-33 148.3 132 58.3
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-32 145.2 213 46.0
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 6.0e-32 142.9 77 84.4
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-31 141.7 77 84.4
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 5.1e-31 139.8 102 68.6
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 3.3e-30 137.1 160 47.5
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 4.8e-29 133.3 76 75.0
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 3.4e-27 127.1 217 44.2
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 2.2e-26 124.4 69 82.6
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.9e-26 123.2 92 64.1
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 2.4e-25 120.9 85 71.8
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.6e-24 118.2 56 94.6
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 3.3e-22 110.5 82 62.2
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 7.4e-22 109.4 93 61.3
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 8.1e-21 105.9 106 50.9
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 2.2e-18 97.8 100 51.0
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.9e-17 94.7 57 68.4
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 1.8e-15 88.2 50 86.0
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 3.0e-15 87.4 85 45.9
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 6.7e-15 86.3 50 88.0
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 4.8e-13 80.1 56 60.7
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 6.2e-13 79.7 186 30.1
BcaC05g26339 Brassica carinata HOM05D010092 ORTHO05D012468 5.3e-12 76.6 188 36.2
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.4e-11 73.9 177 29.4
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 1.0e-10 72.4 40 85.0
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 1.1e-09 68.9 220 25.9
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.1e-09 68.9 177 29.4
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 1.9e-09 68.2 56 64.3
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 1.0e-07 62.4 53 54.7
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 6.7e-07 59.7 53 54.7
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 8.7e-07 59.3 92 39.1
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.9e-06 58.2 63 46.0
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 4.3e-06 57.0 66 45.5
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 5.7e-06 56.6 40 62.5
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 7.4e-06 56.2 121 33.1


User provided reference genes

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