Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 2.2e-185 653.3 720 100.0
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 1.4e-115 421.4 552 88.9
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 9.4e-112 408.7 550 90.0
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 2.2e-108 397.5 548 88.5
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 3.3e-88 330.5 582 74.4
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 5.8e-77 293.1 583 70.3
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 2.7e-66 257.7 224 67.4
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 1.3e-65 255.4 582 71.5
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 1.5e-64 251.9 582 71.0
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 5.6e-64 250.0 582 71.0
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 3.4e-61 240.7 554 65.2
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 4.4e-61 240.4 586 70.5
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 3.2e-59 234.2 233 58.8
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 4.3e-56 223.8 583 65.4
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 6.2e-55 219.9 208 63.0
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 4.2e-43 180.6 231 45.9
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 9.3e-43 179.5 220 48.2
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 2.1e-42 178.3 228 45.6
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 6.0e-42 176.8 228 44.3
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 7.8e-42 176.4 235 43.8
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 1.5e-40 172.2 216 43.1
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 1.5e-40 172.2 230 42.6
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 2.5e-40 171.4 221 46.6
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 5.6e-40 170.2 229 43.2
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 3.6e-39 167.5 199 45.7
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 1.2e-37 162.5 201 41.3
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 1.2e-37 162.5 243 40.3
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 2.0e-37 161.8 241 41.1
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 2.6e-37 161.4 212 44.8
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 3.4e-37 161.0 231 41.1
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 3.4e-37 161.0 216 44.0
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 4.5e-37 160.6 229 42.8
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 9.9e-37 159.5 206 44.7
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 1.7e-36 158.7 205 43.9
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 1.7e-36 158.7 216 42.6
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 2.2e-36 158.3 548 56.6
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 3.8e-36 157.5 216 44.9
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 1.1e-35 156.0 229 40.2
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 1.4e-35 155.6 229 40.2
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 4.2e-35 154.1 233 42.5
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 5.4e-35 153.7 228 39.9
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 1.2e-34 152.5 243 41.2
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 2.1e-34 151.8 243 41.2
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 2.7e-34 151.4 242 41.3
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 1.0e-33 149.4 224 40.2
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 1.3e-33 149.1 251 36.7
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 1.5e-32 145.6 143 46.2
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 2.5e-32 144.8 226 41.2
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 2.5e-32 144.8 229 41.0
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 3.3e-32 144.4 152 46.1
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 5.6e-32 143.7 158 48.1
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 1.3e-31 142.5 209 41.6
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 2.8e-31 141.4 143 51.0
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 3.1e-30 137.9 158 46.8
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 4.0e-30 137.5 218 39.4
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 6.9e-30 136.7 238 37.0
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 2.0e-29 135.2 190 41.1
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 2.0e-29 135.2 176 41.5
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 5.8e-29 133.7 189 42.3
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 5.8e-29 133.7 190 42.6
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 7.6e-29 133.3 189 40.7
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 7.6e-29 133.3 146 48.6
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 1.3e-28 132.5 216 35.6
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 1.3e-28 132.5 229 38.4
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 2.2e-28 131.7 224 38.8
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 3.8e-28 131.0 188 40.4
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 4.9e-28 130.6 149 40.3
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 6.5e-28 130.2 151 43.7
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 6.5e-28 130.2 223 35.4
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 6.5e-28 130.2 149 40.9
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 8.4e-28 129.8 149 39.6
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 1.4e-27 129.0 149 41.6
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 2.5e-27 128.3 136 47.1
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 5.5e-27 127.1 151 43.0
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 7.1e-27 126.7 153 43.8
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 2.1e-26 125.2 214 39.7
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 2.7e-26 124.8 185 42.2
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 3.5e-26 124.4 149 40.9
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 1.1e-24 119.4 176 35.8
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 3.7e-23 114.4 147 42.2
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 2.2e-20 105.1 92 54.3
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 5.0e-20 104.0 160 34.4
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 1.9e-19 102.1 142 36.6
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 1.3e-15 89.4 137 38.7
C05p22100 Brassica napus HOM05D007426 ORTHO05D009167 3.7e-15 87.8 186 86.6
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 3.7e-15 87.8 154 35.7
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 8.2e-15 86.7 73 56.2
FAN12G1126 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.8e-14 85.5 71 54.9
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 2.5e-11 75.1 103 39.8
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 1.2e-10 72.8 175 28.6
BcaC05g26202 Brassica carinata HOM05D007426 ORTHO05D009167 1.8e-09 68.9 43 76.7
BolC5t30906H Brassica oleracea HOM05D007426 ORTHO05D009167 1.8e-09 68.9 43 76.7
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 1.8e-09 68.9 76 46.1
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 2.8e-07 61.6 94 36.2
Zm00001eb406750 Zea mays HOM05D025020 ORTHO05D009167 2.4e-06 58.5 140 34.3
FAN07G1506 Fragaria x ananassa HOM05D007426 ORTHO05D009167 4.1e-06 57.8 58 46.6
ATR0697G176 Amborella trichopoda HOM05D000104 ORTHO05D026583 5.3e-06 57.4 142 28.2
MBI16_g10987_MAGBIO Magnolia biondii HOM05D007639 ORTHO05D009509 5.3e-06 57.4 144 27.8


User provided reference genes

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