Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.2e-67 259.6 125 100.0
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 4.1e-63 244.6 125 92.0
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 5.3e-63 244.2 125 92.8
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 9.1e-63 243.4 126 93.7
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 3.4e-62 241.5 126 92.1
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 3.4e-62 241.5 126 92.1
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 5.9e-62 240.7 125 91.2
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 1.0e-61 240.0 126 91.3
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 1.3e-61 239.6 125 92.0
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 1.7e-61 239.2 124 91.9
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 2.5e-60 235.3 128 89.1
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 2.5e-60 235.3 128 89.1
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 3.2e-60 235.0 127 89.0
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 3.2e-60 235.0 127 89.0
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.6e-59 232.6 126 88.1
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 2.1e-59 232.3 127 88.2
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 2.7e-59 231.9 125 88.0
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 1.0e-58 229.9 129 86.8
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 3.0e-58 228.4 125 84.0
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 3.3e-57 224.9 125 84.0
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.3e-56 223.0 125 81.6
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 3.7e-56 221.5 125 81.6
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 2.4e-55 218.8 125 82.4
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 4.1e-55 218.0 125 80.8
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 2.0e-54 215.7 125 80.8
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 2.6e-54 215.3 125 80.0
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 4.5e-54 214.5 125 80.0
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 5.9e-54 214.2 125 80.0
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 1.3e-53 213.0 125 80.0
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.7e-53 212.6 125 79.2
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 2.2e-53 212.2 125 79.2
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 2.2e-53 212.2 113 90.3
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 5.5e-52 207.6 125 81.6
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 7.2e-52 207.2 125 80.0
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 7.2e-52 207.2 125 79.2
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 1.2e-51 206.5 125 76.8
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 1.6e-51 206.1 125 78.4
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 2.1e-51 205.7 125 79.2
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 3.6e-51 204.9 123 78.9
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 3.6e-51 204.9 123 78.9
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 4.7e-51 204.5 125 77.6
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 6.1e-51 204.1 125 77.6
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 6.1e-51 204.1 125 76.0
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 6.1e-51 204.1 125 80.8
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 8.0e-51 203.8 125 79.2
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.0e-50 203.4 125 76.8
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 1.0e-50 203.4 125 78.4
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 1.4e-50 203.0 125 76.0
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.4e-50 203.0 125 75.2
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 1.8e-50 202.6 125 77.6
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 1.8e-50 202.6 125 80.0
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 3.0e-50 201.8 125 76.0
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 4.0e-50 201.4 125 75.2
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 5.2e-50 201.1 125 74.4
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 5.2e-50 201.1 125 74.4
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 6.7e-50 200.7 125 75.2
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 6.7e-50 200.7 125 75.2
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 6.7e-50 200.7 123 76.4
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 8.8e-50 200.3 125 73.6
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 8.8e-50 200.3 125 76.8
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 8.8e-50 200.3 124 75.0
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 8.8e-50 200.3 125 72.8
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.2e-49 199.9 125 78.4
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 1.2e-49 199.9 125 76.0
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 1.5e-49 199.5 125 76.0
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 2.0e-49 199.1 125 76.0
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 2.0e-49 199.1 125 76.8
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.6e-49 198.7 125 73.6
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 3.3e-49 198.4 123 76.4
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 4.4e-49 198.0 124 75.0
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 4.4e-49 198.0 125 76.0
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 4.4e-49 198.0 125 76.0
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 4.4e-49 198.0 124 73.4
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 5.7e-49 197.6 125 75.2
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 7.5e-49 197.2 123 75.6
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 7.5e-49 197.2 125 72.0
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 9.7e-49 196.8 125 73.6
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 1.3e-48 196.4 125 77.6
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 1.7e-48 196.1 125 71.2
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 1.7e-48 196.1 125 76.0
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 1.7e-48 196.1 125 74.4
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 2.2e-48 195.7 125 74.4
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.2e-48 195.7 125 75.2
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.2e-48 195.7 125 72.0
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 2.8e-48 195.3 125 74.4
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 3.7e-48 194.9 125 76.0
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 4.8e-48 194.5 125 76.8
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 4.8e-48 194.5 125 76.8
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 6.3e-48 194.1 125 75.2
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 6.3e-48 194.1 125 75.2
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 6.3e-48 194.1 125 76.0
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 6.3e-48 194.1 123 74.8
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 6.3e-48 194.1 125 74.4
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 6.3e-48 194.1 125 75.2
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 6.3e-48 194.1 125 73.6
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 8.2e-48 193.7 125 74.4
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 8.2e-48 193.7 125 74.4
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 8.2e-48 193.7 125 76.8
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 8.2e-48 193.7 125 75.2
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 1.1e-47 193.4 125 75.2
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 1.1e-47 193.4 124 73.4
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 1.8e-47 192.6 125 74.4
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 1.8e-47 192.6 125 74.4
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 1.8e-47 192.6 125 72.8
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.8e-47 192.6 125 74.4
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 1.8e-47 192.6 125 73.6
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 1.8e-47 192.6 125 74.4
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 1.8e-47 192.6 123 74.0
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 2.4e-47 192.2 123 74.0
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 4.1e-47 191.4 125 76.0
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 5.3e-47 191.0 125 73.6
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 7.0e-47 190.7 118 80.5
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 9.1e-47 190.3 125 71.2
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 1.2e-46 189.9 125 74.4
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 1.6e-46 189.5 125 73.6
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 2.0e-46 189.1 125 74.4
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 2.7e-46 188.7 125 72.0
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 4.5e-46 188.0 125 71.2
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 4.5e-46 188.0 125 72.8
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 5.9e-46 187.6 125 72.8
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 5.9e-46 187.6 125 72.8
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 7.7e-46 187.2 125 68.8
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 1.0e-45 186.8 125 71.2
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 1.7e-45 186.0 118 72.0
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 3.8e-45 184.9 125 68.8
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 3.8e-45 184.9 125 68.0
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 6.5e-45 184.1 125 72.8
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 6.5e-45 184.1 125 70.4
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 8.5e-45 183.7 125 68.8
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 8.5e-45 183.7 125 70.4
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.1e-44 183.3 125 67.2
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 1.1e-44 183.3 118 74.6
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 1.5e-44 183.0 125 69.6
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 2.5e-44 182.2 125 70.4
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 4.2e-44 181.4 124 70.2
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 5.2e-42 174.5 125 64.8
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 6.8e-42 174.1 125 66.4
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 8.8e-42 173.7 125 65.6
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 1.5e-41 172.9 118 69.5
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 2.6e-41 172.2 125 64.0
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 7.5e-41 170.6 124 64.5
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 9.8e-41 170.2 123 67.5
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 6.3e-40 167.5 118 69.5
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 1.1e-39 166.8 125 62.4
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 7.0e-39 164.1 120 65.0
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.2e-38 163.3 116 70.7
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 2.0e-38 162.5 117 66.7
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 3.5e-38 161.8 123 65.0
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.3e-37 159.8 118 65.3
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 5.0e-37 157.9 123 61.8
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.0e-37 157.9 111 67.6
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 5.5e-36 154.5 125 60.0
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 5.5e-36 154.5 125 63.2
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 8.9e-34 147.1 132 50.8
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 7.0e-31 137.5 89 73.0
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 9.2e-31 137.1 131 50.4
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 1.6e-30 136.3 124 53.2
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 1.1e-28 130.2 134 47.8
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 6.1e-27 124.4 108 56.5
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 4.4e-25 118.2 124 50.0
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 6.4e-24 114.4 108 55.6
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 3.5e-22 108.6 117 49.6
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 4.6e-22 108.2 124 46.8
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 7.3e-20 100.9 68 64.7
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 1.6e-19 99.8 69 63.8
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 1.9e-15 86.3 65 60.0
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.0e-13 79.0 59 61.0
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 3.1e-10 68.9 40 70.0


User provided reference genes

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