Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR022640 Cardamine hirsuta HOM05D003496 ORTHO05D003909 5.7e-44 180.6 99 100.0
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 2.0e-33 145.6 99 81.8
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 2.9e-32 141.7 99 80.8
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 1.5e-31 139.4 99 78.8
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 2.1e-30 135.6 99 75.8
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 8.0e-30 133.7 95 77.9
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 3.5e-25 118.2 95 72.6
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 9.5e-23 110.2 99 60.6
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 3.6e-22 108.2 96 62.5
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 3.6e-22 108.2 96 62.5
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 6.2e-22 107.5 96 63.5
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 6.2e-22 107.5 94 61.7
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 1.1e-21 106.7 94 61.7
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 2.3e-21 105.5 94 60.6
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 1.5e-20 102.8 94 59.6
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 2.0e-20 102.4 94 58.5
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 2.0e-20 102.4 94 58.5
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 2.0e-20 102.4 94 58.5
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 2.2e-19 99.0 96 61.5
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 6.4e-19 97.4 87 60.9
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 6.4e-19 97.4 87 60.9
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 6.4e-19 97.4 99 53.5
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 6.4e-19 97.4 92 57.6
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 6.4e-19 97.4 97 51.5
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 3.2e-18 95.1 96 53.1
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 7.0e-18 94.0 97 52.6
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 7.0e-18 94.0 99 52.5
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 9.2e-18 93.6 92 56.5
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 9.2e-18 93.6 96 52.1
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.0e-17 92.4 96 51.0
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 2.0e-17 92.4 99 56.6
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.7e-17 92.0 96 52.1
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 3.5e-17 91.7 99 51.5
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 6.0e-17 90.9 96 50.0
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 7.8e-17 90.5 99 48.5
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 7.8e-17 90.5 99 48.5
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.0e-16 90.1 96 50.0
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 1.3e-16 89.7 99 47.5
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 1.3e-16 89.7 99 47.5
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 1.3e-16 89.7 99 47.5
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 1.3e-16 89.7 96 50.0
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 1.7e-16 89.4 99 46.5
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 1.7e-16 89.4 96 47.9
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 2.3e-16 89.0 99 47.5
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 3.9e-16 88.2 96 50.0
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 1.1e-15 86.7 94 50.0
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 1.5e-15 86.3 96 51.0
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 1.9e-15 85.9 96 47.9
BcaC05g26434 Brassica carinata HOM05D000415 ORTHO05D003909 3.3e-15 85.1 79 57.0
C05p24820 Brassica napus HOM05D000415 ORTHO05D003909 3.3e-15 85.1 79 57.0
BolC5t31211H Brassica oleracea HOM05D003496 ORTHO05D003909 3.3e-15 85.1 79 57.0
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 5.6e-15 84.3 99 48.5
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 7.3e-15 84.0 99 46.5
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 9.5e-15 83.6 98 40.8
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 9.5e-15 83.6 104 46.2
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 1.2e-14 83.2 96 43.8
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 2.1e-14 82.4 99 44.4
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 2.1e-14 82.4 97 45.4
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 2.8e-14 82.0 99 45.5
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 4.7e-14 81.3 99 43.4
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 6.2e-14 80.9 96 46.9
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 6.2e-14 80.9 95 45.3
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 8.1e-14 80.5 96 45.8
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 8.1e-14 80.5 96 45.8
FAN18G0092 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.4e-13 79.7 105 45.7
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 4.0e-13 78.2 86 47.7
Actinidia10322 Actinidia chinensis HOM05D003496 ORTHO05D003909 8.9e-13 77.0 96 43.8
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 1.2e-12 76.6 96 44.8
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.2e-12 76.6 99 43.4
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 2.6e-12 75.5 85 49.4
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 7.5e-12 73.9 99 42.4
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 1.3e-11 73.2 99 37.4
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.3e-11 73.2 99 41.4
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 1.7e-11 72.8 99 36.4
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.7e-11 72.8 99 41.4
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 3.7e-11 71.6 97 44.3
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 3.7e-11 71.6 96 45.8
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 8.3e-11 70.5 99 40.4
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 8.3e-11 70.5 92 41.3
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 1.1e-10 70.1 96 44.8
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 1.1e-10 70.1 97 42.3
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.4e-10 69.7 104 41.3
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 1.9e-10 69.3 92 40.2
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 1.9e-10 69.3 96 44.8
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 1.9e-10 69.3 99 36.4
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 2.4e-10 68.9 99 38.4
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 3.2e-10 68.6 99 40.4
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 3.2e-10 68.6 99 38.4
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 4.1e-10 68.2 99 42.4
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 7.1e-10 67.4 97 40.2
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 9.2e-10 67.0 96 39.6
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 1.6e-09 66.2 85 41.2
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 2.1e-09 65.9 99 40.4
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 2.1e-09 65.9 87 44.8
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 4.6e-09 64.7 84 40.5
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 4.6e-09 64.7 91 42.9
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 6.0e-09 64.3 99 38.4
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 6.0e-09 64.3 99 36.4
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 6.0e-09 64.3 99 38.4
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 1.7e-08 62.8 83 37.3
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 1.7e-08 62.8 83 37.3
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 1.7e-08 62.8 110 35.5
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 1.7e-08 62.8 99 33.3
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 3.0e-08 62.0 96 35.4
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 3.9e-08 61.6 100 43.0
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 6.6e-08 60.8 99 40.4
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 8.6e-08 60.5 99 40.4
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 8.6e-08 60.5 99 35.4
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 1.1e-07 60.1 99 41.4
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.5e-07 59.7 99 41.4
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 1.5e-07 59.7 95 42.1
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 2.5e-07 58.9 95 40.0
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 3.3e-07 58.5 96 38.5
Actinidia30771 Actinidia chinensis HOM05D003496 ORTHO05D003909 9.5e-07 57.0 69 42.0
FvH4_5g37879 Fragaria vesca HOM05D003496 ORTHO05D003909 4.7e-06 54.7 53 54.7
FAN08G0731 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.7e-06 54.7 53 54.7


User provided reference genes

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