Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR022630 Cardamine hirsuta HOM05D003496 ORTHO05D003909 4.4e-148 528.1 301 100.0
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 1.5e-111 406.8 285 82.5
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 6.9e-109 397.9 259 86.9
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 2.6e-108 396.0 259 86.5
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 6.1e-105 384.8 269 81.8
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 1.1e-103 380.6 269 81.0
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 2.6e-92 342.8 301 66.4
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 1.8e-77 293.5 289 63.0
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.8e-77 293.5 269 67.3
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 1.7e-70 270.4 240 65.8
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 1.7e-70 270.4 240 65.8
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 5.0e-67 258.8 295 55.9
FvH4_5g32780 Fragaria vesca HOM05D003496 ORTHO05D003909 1.9e-66 256.9 295 48.8
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 3.2e-61 239.6 267 53.2
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 3.2e-61 239.6 267 53.2
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 1.1e-56 224.6 279 48.0
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 1.8e-56 223.8 283 46.6
SHI03709 Sapria himalayana HOM05D003496 ORTHO05D000023 1.8e-56 223.8 298 46.6
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 1.5e-55 220.7 301 45.2
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 2.6e-55 219.9 240 57.9
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 2.6e-55 219.9 264 50.4
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 2.6e-55 219.9 301 45.2
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 4.4e-55 219.2 239 58.2
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 4.4e-55 219.2 239 58.2
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 9.8e-55 218.0 301 44.2
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 1.7e-54 217.2 275 49.5
FAN18G2959 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.4e-53 214.2 295 44.1
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 2.4e-53 213.4 278 46.4
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 3.2e-53 213.0 270 47.0
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 4.6e-52 209.1 301 43.5
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 1.0e-51 208.0 259 52.5
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 1.7e-51 207.2 297 43.8
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 3.9e-51 206.1 293 45.7
FAN08G2337 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.1e-50 204.5 305 43.0
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 1.9e-50 203.8 301 44.2
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 2.5e-50 203.4 239 54.4
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 2.5e-50 203.4 305 42.6
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 4.3e-50 202.6 267 44.9
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 5.6e-50 202.2 240 54.2
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 7.3e-50 201.8 239 54.4
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 7.3e-50 201.8 239 54.4
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 2.1e-49 200.3 297 42.4
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 3.6e-49 199.5 239 54.0
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 3.6e-49 199.5 239 53.1
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 2.3e-48 196.8 270 45.2
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 3.1e-48 196.4 239 53.6
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 4.0e-48 196.1 271 45.8
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 2.0e-47 193.7 267 46.4
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 2.0e-47 193.7 280 45.0
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 2.6e-47 193.4 282 45.0
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 2.2e-46 190.3 283 41.7
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.2e-46 190.3 283 41.7
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.9e-46 189.9 294 40.8
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 2.9e-46 189.9 301 41.2
RcHm_v2.0_Chr0c28g0501041 Rosa chinensis HOM05D003496 ORTHO05D003909 4.9e-46 189.1 235 47.7
RcHm_v2.0_Chr7g0243601 Rosa chinensis HOM05D003496 ORTHO05D003909 4.9e-46 189.1 235 47.7
RcHm_v2.0_Chr0c28g0500941 Rosa chinensis HOM05D003496 ORTHO05D003909 4.1e-45 186.0 254 48.0
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 7.1e-45 185.3 270 44.4
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 9.2e-45 184.9 286 41.3
TPR.G7886 Trifolium pratense HOM05D003496 ORTHO05D003909 2.7e-44 183.3 267 41.9
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 3.5e-44 183.0 298 39.3
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 1.7e-43 180.6 304 40.8
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.7e-43 180.6 288 39.9
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 5.1e-43 179.1 269 44.6
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 8.6e-43 178.3 267 44.2
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 1.5e-42 177.6 301 39.9
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 1.9e-42 177.2 300 39.7
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 2.5e-42 176.8 290 42.8
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.5e-42 176.8 265 44.5
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 5.6e-42 175.6 283 41.0
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 7.3e-42 175.3 239 49.0
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 7.3e-42 175.3 290 41.4
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 7.3e-42 175.3 283 39.6
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 7.3e-42 175.3 281 42.3
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 9.5e-42 174.9 300 37.7
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 9.5e-42 174.9 281 40.9
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 8.1e-41 171.8 288 40.6
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 1.4e-40 171.0 290 42.1
VMungo0647G0446 Vigna mungo HOM05D003496 ORTHO05D003909 2.4e-40 170.2 298 37.6
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 6.8e-40 168.7 291 40.5
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 2.0e-39 167.2 283 40.3
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 3.4e-39 166.4 273 43.6
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 4.4e-39 166.0 292 37.0
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 9.9e-39 164.9 292 41.1
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 9.9e-39 164.9 267 39.7
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 1.7e-38 164.1 275 40.0
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 6.4e-38 162.2 259 42.9
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 1.1e-37 161.4 275 38.2
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 1.4e-37 161.0 262 42.0
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 2.4e-37 160.2 164 53.7
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 3.2e-37 159.8 277 40.1
Lj5A269G20 Lonicera japonica HOM05D003496 ORTHO05D003909 4.2e-37 159.5 301 38.5
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 4.6e-36 156.0 272 39.0
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 1.0e-35 154.8 236 45.8
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 2.3e-35 153.7 267 39.3
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 1.5e-34 151.0 270 38.9
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 2.5e-34 150.2 267 39.7
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 3.3e-34 149.8 237 41.4
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 7.3e-34 148.7 267 38.2
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 9.6e-34 148.3 267 38.2
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 2.1e-33 147.1 267 38.2
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 2.8e-33 146.7 267 39.0
Solyc04g074120.4 Solanum lycopersicum HOM05D003496 ORTHO05D003909 3.6e-33 146.4 221 44.8
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 6.2e-33 145.6 297 37.0
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 6.2e-33 145.6 284 38.7
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 6.2e-33 145.6 267 38.6
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 8.1e-33 145.2 257 38.9
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 2.4e-32 143.7 281 37.0
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 9.0e-32 141.7 267 36.7
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 7.6e-31 138.7 284 37.7
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 7.6e-31 138.7 270 36.3
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 7.6e-31 138.7 270 36.3
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 1.3e-30 137.9 275 37.1
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 3.8e-30 136.3 260 38.5
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 3.8e-30 136.3 281 35.9
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 6.4e-30 135.6 277 35.7
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 3.2e-29 133.3 301 33.2
FvH4_5g39261 Fragaria vesca HOM05D003496 ORTHO05D003909 2.7e-28 130.2 136 55.1
PSO761G0292 Papaver somniferum HOM05D003496 ORTHO05D003909 6.0e-28 129.0 263 36.9
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 7.8e-28 128.6 235 39.1
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 1.3e-27 127.9 260 36.2
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 1.7e-27 127.5 295 34.2
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 6.6e-27 125.6 207 41.5
Aqoxy4G03086 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.1e-26 124.8 276 35.1
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 1.5e-26 124.4 132 56.1
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 1.5e-26 124.4 138 53.6
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 4.3e-26 122.9 274 35.8
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 5.6e-26 122.5 237 36.7
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 9.6e-26 121.7 267 35.2
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 1.3e-25 121.3 293 33.8
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 2.8e-25 120.2 301 31.6
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 3.6e-25 119.8 229 40.2
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 1.1e-24 118.2 132 50.0
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 4.9e-22 109.4 95 70.5
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 5.4e-21 105.9 267 34.1
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 6.7e-19 99.0 267 30.3
BcaB06g27425 Brassica carinata HOM05D003496 ORTHO05D003909 1.3e-17 94.7 123 51.2
Glyma.14G121700 Glycine max HOM05D003496 ORTHO05D003909 2.8e-17 93.6 87 52.9
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 6.2e-17 92.4 247 33.6
RcHm_v2.0_Chr0c28g0500891 Rosa chinensis HOM05D003496 ORTHO05D003909 1.8e-16 90.9 99 56.6
FvH4_5g32650 Fragaria vesca HOM05D003496 ORTHO05D003909 2.4e-16 90.5 130 41.5
MBI16_g15384_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D003909 1.5e-15 87.8 89 56.2
FvH4_5g39260 Fragaria vesca HOM05D003496 ORTHO05D003909 2.2e-14 84.0 116 39.7
SEGI_13289 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 2.2e-14 84.0 330 26.4
MBI19_g10187_MAGBIO Magnolia biondii HOM05D020163 ORTHO05D003909 1.1e-10 71.6 120 40.8
FAN08G1794 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.2e-09 65.9 144 32.6
MBI02_g14193_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D003909 6.9e-08 62.4 66 53.0
MBI08_g24353_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D030050 2.0e-07 60.8 113 38.9
ECA236G3179 Erigeron canadensis HOM05D003496 ORTHO05D003909 2.6e-07 60.5 112 45.5
Lsat_1_v5_gn_8_133541 Lactuca sativa HOM05D000087 ORTHO05D014732 5.8e-07 59.3 55 58.2
Mapoly0040s0123 Marchantia polymorpha HOM05D003496 ORTHO05D003909 7.6e-07 58.9 237 26.6
MBI05_g41336_MAGBIO Magnolia biondii HOM05D003496 ORTHO05D030050 2.2e-06 57.4 66 51.5


User provided reference genes

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