Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR022310 Cardamine hirsuta HOM05D005828 ORTHO05D006822 7.8e-46 186.8 97 100.0
AL1G35150 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 1.2e-41 172.9 98 91.8
AL1G35290 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 1.2e-41 172.9 98 91.8
Carub.0001s2142 Capsella rubella HOM05D005828 ORTHO05D006822 2.6e-41 171.8 98 90.8
BcaC06g34917 Brassica carinata HOM05D005828 ORTHO05D006822 2.7e-38 161.8 93 86.0
C07p21820 Brassica napus HOM05D005828 ORTHO05D006822 2.7e-38 161.8 93 86.0
BolC7t42713H Brassica oleracea HOM05D005828 ORTHO05D006822 2.7e-38 161.8 93 86.0
AT1G21930 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 3.9e-37 157.9 99 84.8
Aa31LG7G5940 Aethionema arabicum HOM05D005828 ORTHO05D006822 1.1e-36 156.4 98 82.7
Thhalv10009188m.g Eutrema salsugineum HOM05D005828 ORTHO05D006822 1.1e-36 156.4 97 81.4
AT3G42150 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 3.3e-36 154.8 101 82.2
Sp1g19470 Schrenkiella parvula HOM05D005828 ORTHO05D006822 2.8e-35 151.8 100 79.0
BcaC05g26118 Brassica carinata HOM05D005828 ORTHO05D006822 4.8e-35 151.0 94 81.9
BcaC05g26120 Brassica carinata HOM05D005828 ORTHO05D006822 4.8e-35 151.0 94 81.9
C05p20980 Brassica napus HOM05D005828 ORTHO05D006822 4.8e-35 151.0 94 81.9
BolC5t30796H Brassica oleracea HOM05D005828 ORTHO05D006822 4.8e-35 151.0 94 81.9
BcaB03g14247 Brassica carinata HOM05D005828 ORTHO05D006822 1.1e-34 149.8 100 80.0
A09p42800 Brassica napus HOM05D005828 ORTHO05D006822 1.1e-34 149.8 94 80.9
BraA09t39754Z Brassica rapa HOM05D005828 ORTHO05D006822 1.1e-34 149.8 94 80.9
BcaB07g32190 Brassica carinata HOM05D005828 ORTHO05D006822 4.0e-34 147.9 97 79.4
BcaB07g32192 Brassica carinata HOM05D005828 ORTHO05D006822 2.0e-33 145.6 88 81.8
A07p14860 Brassica napus HOM05D005828 ORTHO05D006822 2.6e-33 145.2 79 88.6
THA.LOC104810143 Tarenaya hassleriana HOM05D005828 ORTHO05D006822 4.5e-33 144.4 94 80.9
ClCG11G015600 Citrullus lanatus HOM05D005828 ORTHO05D006822 2.9e-32 141.7 97 75.3
TPR.G8500 Trifolium pratense HOM05D005828 ORTHO05D006822 4.9e-32 141.0 97 72.2
Actinidia23063 Actinidia chinensis HOM05D005828 ORTHO05D006822 1.4e-31 139.4 90 78.9
TWI56G1238 Tripterygium wilfordii HOM05D005828 ORTHO05D006822 2.4e-31 138.7 93 75.3
AUR62011415 Chenopodium quinoa HOM05D005828 ORTHO05D006822 3.2e-31 138.3 89 75.3
AUR62022881 Chenopodium quinoa HOM05D005828 ORTHO05D006822 3.2e-31 138.3 89 75.3
Eucgr.F03768 Eucalyptus grandis HOM05D005828 ORTHO05D006822 3.2e-31 138.3 86 77.9
EL10Ac9g21807 Beta vulgaris HOM05D005828 ORTHO05D006822 4.2e-31 137.9 83 80.7
PSO170G1674 Papaver somniferum HOM05D005828 ORTHO05D006822 4.2e-31 137.9 98 69.4
Peaxi162Scf00241g00022 Petunia axillaris HOM05D005828 ORTHO05D006822 7.1e-31 137.1 87 75.9
Ca_03724_v3 Cicer arietinum L. HOM05D005828 ORTHO05D006822 9.3e-31 136.7 93 73.1
Prupe.1G501700 Prunus persica HOM05D005828 ORTHO05D006822 9.3e-31 136.7 83 78.3
Solyc03g093220.3 Solanum lycopersicum HOM05D005828 ORTHO05D006822 9.3e-31 136.7 90 74.4
Sopen03g024020 Solanum pennellii HOM05D005828 ORTHO05D006822 9.3e-31 136.7 90 74.4
Dinv40388 Davidia involucrata HOM05D005828 ORTHO05D006822 1.2e-30 136.3 84 78.6
Glyma.14G162800 Glycine max HOM05D005828 ORTHO05D006822 1.6e-30 136.0 94 74.5
Ah.01g019990 Amaranthus hybridus HOM05D005828 ORTHO05D006822 2.1e-30 135.6 83 79.5
CSS0005937 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 2.1e-30 135.6 94 74.5
Ciclev10002958m.g Citrus clementina HOM05D005828 ORTHO05D006822 2.1e-30 135.6 93 76.3
Sed0016516 Sechium edule HOM05D005828 ORTHO05D006822 2.1e-30 135.6 94 71.3
Glyma.13G081900 Glycine max HOM05D005828 ORTHO05D006822 3.5e-30 134.8 94 74.5
Nn7g37602 Nelumbo nucifera HOM05D005828 ORTHO05D006822 3.5e-30 134.8 83 79.5
PGR042G1795 Punica granatum HOM05D005828 ORTHO05D006822 3.5e-30 134.8 86 73.3
Rhsim10G0081200 Rhododendron simsii HOM05D005828 ORTHO05D006822 3.5e-30 134.8 91 74.7
Oeu050902.1 Olea europaea HOM05D005828 ORTHO05D006822 4.6e-30 134.4 90 75.6
GSVIVG01013096001 Vitis vinifera HOM05D005828 ORTHO05D006822 4.6e-30 134.4 82 78.0
arahy.Tifrunner.gnm1.ann1.IQQ61N Arachis hypogaea HOM05D005828 ORTHO05D006822 6.0e-30 134.0 84 77.4
Hma1.2p1_0248F.1_g102070 Hydrangea macrophylla HOM05D005828 ORTHO05D006822 6.0e-30 134.0 86 74.4
Lalb_Chr04g0253341 Lupinus albus HOM05D005828 ORTHO05D006822 6.0e-30 134.0 94 72.3
Aqoxy6G00155 Aquilegia oxysepala HOM05D005828 ORTHO05D006822 7.9e-30 133.7 94 71.3
Lj1g0023360 Lotus japonicus HOM05D005828 ORTHO05D006822 7.9e-30 133.7 94 73.4
Nitab4.5_0010023g0030 Nicotiana tabacum HOM05D005828 ORTHO05D006822 7.9e-30 133.7 93 68.8
Phvul.008G165500 Phaseolus vulgaris HOM05D005828 ORTHO05D006822 7.9e-30 133.7 94 72.3
MD15G1353400 Malus domestica HOM05D005828 ORTHO05D006822 1.0e-29 133.3 83 77.1
TAR628G1302 Trochodendron aralioides HOM05D005828 ORTHO05D006822 1.0e-29 133.3 91 72.5
Cc10_g15090 Coffea canephora HOM05D005828 ORTHO05D006822 1.3e-29 132.9 90 75.6
RcHm_v2.0_Chr6g0295391 Rosa chinensis HOM05D005828 ORTHO05D006822 1.3e-29 132.9 96 72.9
ECA246G1275 Erigeron canadensis HOM05D005828 ORTHO05D006822 1.8e-29 132.5 88 69.3
Nn1g08691 Nelumbo nucifera HOM05D005828 ORTHO05D006822 1.8e-29 132.5 94 72.3
Hund16842 Selenicereus undatus HOM05D005828 ORTHO05D006822 1.8e-29 132.5 90 75.6
FvH4_2g26520 Fragaria vesca HOM05D005828 ORTHO05D006822 2.3e-29 132.1 86 76.7
FAN24G3109 Fragaria x ananassa HOM05D005828 ORTHO05D006822 2.3e-29 132.1 86 76.7
Psat2g078520 Pisum sativum HOM05D005828 ORTHO05D006822 2.3e-29 132.1 93 68.8
SGA_v2.0_scaffold52G18982 Striga asiatica HOM05D005828 ORTHO05D006822 2.3e-29 132.1 90 74.4
Potri.002G086300 Populus trichocarpa HOM05D005828 ORTHO05D006822 3.0e-29 131.7 90 74.4
Nitab4.5_0002816g0110 Nicotiana tabacum HOM05D005828 ORTHO05D006822 3.9e-29 131.3 93 68.8
ATR0021G028 Amborella trichopoda HOM05D005828 ORTHO05D006822 5.1e-29 131.0 85 74.1
Gohir.A06G042500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 5.1e-29 131.0 94 73.4
Gohir.D06G043500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 5.1e-29 131.0 94 73.4
Gorai.010G048600 Gossypium raimondii HOM05D005828 ORTHO05D006822 5.1e-29 131.0 96 72.9
HanXRQChr12g0379421 Helianthus annuus HOM05D005828 ORTHO05D006822 5.1e-29 131.0 81 72.8
Sc01g0001360 Simmondsia chinensis HOM05D005828 ORTHO05D006822 5.1e-29 131.0 90 71.1
Cpa.g.sc70.13 Carica papaya HOM05D005828 ORTHO05D006822 6.7e-29 130.6 92 71.7
CiPaw.02G169200 Carya illinoinensis HOM05D005828 ORTHO05D006822 6.7e-29 130.6 93 72.0
Manes.18G074748 Manihot esculenta HOM05D005828 ORTHO05D006822 6.7e-29 130.6 77 79.2
Atru.chr13.1407 Acer truncatum HOM05D005828 ORTHO05D006822 8.7e-29 130.2 86 76.7
CAN.G48.25 Capsicum annuum HOM05D005828 ORTHO05D006822 1.5e-28 129.4 87 74.7
Duzib041G0320 Durio zibethinus HOM05D005828 ORTHO05D006822 1.9e-28 129.0 89 71.9
FAN15G3227 Fragaria x ananassa HOM05D005828 ORTHO05D006822 3.3e-28 128.3 86 75.6
Thecc.08G121200 Theobroma cacao HOM05D005828 ORTHO05D006822 3.3e-28 128.3 86 73.3
CDE01G0185 Ceratophyllum demersum HOM05D005828 ORTHO05D006822 4.3e-28 127.9 85 72.9
Migut.G00970 Erythranthe guttata HOM05D005828 ORTHO05D006822 4.3e-28 127.9 84 72.6
Lsat_1_v5_gn_9_83901 Lactuca sativa HOM05D005828 ORTHO05D006822 4.3e-28 127.9 74 79.7
CANSAT64G1100 Cannabis sativa HOM05D005828 ORTHO05D006822 5.6e-28 127.5 97 68.0
Migut.C01150 Erythranthe guttata HOM05D005828 ORTHO05D006822 7.4e-28 127.1 91 68.1
Migut.K01196 Erythranthe guttata HOM05D005828 ORTHO05D006822 7.4e-28 127.1 83 73.5
MBI11_g22242_MAGBIO Magnolia biondii HOM05D005828 ORTHO05D006822 7.4e-28 127.1 89 69.7
Medtr5g059050 Medicago truncatula HOM05D005828 ORTHO05D006822 7.4e-28 127.1 94 69.1
Duzib093G2142 Durio zibethinus HOM05D005828 ORTHO05D006822 1.6e-27 125.9 89 70.8
BolC5t30794H Brassica oleracea HOM05D005828 ORTHO05D006822 2.8e-27 125.2 66 90.9
Dinv27340 Davidia involucrata HOM05D005828 ORTHO05D006822 2.8e-27 125.2 82 74.4
AUR62016643 Chenopodium quinoa HOM05D005828 ORTHO05D006822 3.7e-27 124.8 103 64.1
Os12g0481200 Oryza sativa ssp. japonica HOM05D005828 ORTHO05D006822 4.8e-27 124.4 84 72.6
QL09p036513 Quercus lobata HOM05D005828 ORTHO05D006822 4.8e-27 124.4 93 69.9
FAN27G1656 Fragaria x ananassa HOM05D005828 ORTHO05D006822 6.2e-27 124.0 94 70.2
unitig_22.g6732 Utricularia gibba HOM05D005828 ORTHO05D006822 6.2e-27 124.0 96 64.6
Zm00001eb318220 Zea mays HOM05D005828 ORTHO05D006822 1.1e-26 123.2 87 67.8
CSS0009962 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 3.1e-26 121.7 109 62.4
HPP92_010723 Vanilla planifolia HOM05D005828 ORTHO05D006822 4.0e-26 121.3 86 69.8
RhsimUnG0054200 Rhododendron simsii HOM05D005828 ORTHO05D006822 6.9e-26 120.6 111 60.4
Sabra02G0067700 Salix brachista HOM05D005828 ORTHO05D006822 1.3e-24 116.3 116 57.8
BcaC07g42575 Brassica carinata HOM05D005828 ORTHO05D006822 2.9e-24 115.2 90 68.9
HPP92_010646 Vanilla planifolia HOM05D005828 ORTHO05D006822 3.8e-24 114.8 86 66.3
Rhsim02G0128100 Rhododendron simsii HOM05D005828 ORTHO05D006822 4.9e-24 114.4 81 75.3
CsaV3_4G028420 Cucumis sativus L. HOM05D005828 ORTHO05D006822 6.4e-24 114.0 67 82.1
PGSC0003DMG400014827 Solanum tuberosum HOM05D005828 ORTHO05D006822 8.4e-24 113.6 71 77.5
MELO3C010460.2 Cucumis melo HOM05D005828 ORTHO05D006822 2.4e-23 112.1 77 71.4
vmacro15901 Vaccinium macrocarpon HOM05D005828 ORTHO05D006822 3.2e-23 111.7 80 72.5
DCAR_014107 Daucus carota HOM05D005828 ORTHO05D006822 5.5e-23 110.9 71 77.5
MD08G1168000 Malus domestica HOM05D005828 ORTHO05D006822 2.7e-22 108.6 67 77.6
SalBow1G4500 Salvia bowleyana HOM05D005828 ORTHO05D006822 2.7e-22 108.6 74 73.0
PSO528G0081 Papaver somniferum HOM05D005828 ORTHO05D006822 3.5e-22 108.2 81 69.1
Haze_00481 Corylus avellana HOM05D005828 ORTHO05D006822 6.0e-22 107.5 65 80.0
QL09p035324 Quercus lobata HOM05D005828 ORTHO05D006822 1.8e-21 105.9 96 61.5
DCAR_014096 Daucus carota HOM05D005828 ORTHO05D006822 2.3e-21 105.5 68 76.5
SHI08265 Sapria himalayana HOM05D005828 ORTHO05D006822 1.6e-19 99.4 74 64.9
Zm00001eb102630 Zea mays HOM05D005828 ORTHO05D006822 5.5e-15 84.3 86 53.5
Mapoly0038s0094 Marchantia polymorpha HOM05D005828 ORTHO05D006822 9.3e-15 83.6 66 59.1
Pp3c4_22520 Physcomitrium patens HOM05D005828 ORTHO05D006822 9.3e-15 83.6 71 54.9
Medtr5g058700 Medicago truncatula HOM05D005828 ORTHO05D006822 2.7e-14 82.0 94 53.2
Lalb_Chr17g0343871 Lupinus albus HOM05D005828 ORTHO05D006822 1.3e-13 79.7 47 78.7
SEGI_28823 Sequoiadendron giganteum HOM05D005828 ORTHO05D006822 2.3e-13 79.0 70 65.7
AagrBONN_evm.TU.Sc2ySwM_368.871 Anthoceros agrestis HOM05D005828 ORTHO05D006822 8.2e-11 70.5 63 57.1
BcaB03g11887 Brassica carinata HOM05D005828 ORTHO05D006822 2.4e-10 68.9 48 70.8
BcaNung06341 Brassica carinata HOM05D005828 ORTHO05D006822 2.4e-10 68.9 48 70.8
BcaNung06770 Brassica carinata HOM05D005828 ORTHO05D006822 2.4e-10 68.9 48 70.8
SMO232G0111 Selaginella moellendorffii HOM05D005828 ORTHO05D006822 1.5e-09 66.2 76 50.0
MD03G1196900 Malus domestica HOM05D005828 ORTHO05D006822 2.6e-09 65.5 55 60.0


User provided reference genes

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