Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 2.7e-177 625.2 309 100.0
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 7.9e-108 394.4 318 67.9
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 1.8e-107 393.3 328 65.2
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 1.0e-99 367.5 326 61.0
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 3.3e-90 335.9 330 59.7
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 1.9e-77 293.5 327 53.8
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 2.5e-77 293.1 327 53.8
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 1.2e-76 290.8 327 53.5
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 1.1e-69 267.7 279 55.9
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 1.9e-69 266.9 326 50.6
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 1.6e-68 263.8 326 50.3
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.4e-59 234.2 358 43.3
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.4e-35 154.5 232 41.8
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.2e-34 151.4 253 41.9
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 6.4e-33 145.6 246 38.6
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 1.1e-32 144.8 223 38.6
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 3.2e-32 143.3 232 39.2
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.2e-31 141.4 246 39.4
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 6.0e-31 139.0 217 40.6
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 1.3e-30 137.9 200 42.0
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 8.6e-30 135.2 236 38.6
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 2.5e-29 133.7 231 39.4
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.3e-29 133.3 213 40.4
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 1.2e-28 131.3 347 31.4
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 2.8e-28 130.2 253 36.4
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 3.6e-28 129.8 208 39.9
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 4.7e-28 129.4 240 38.3
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 6.2e-28 129.0 253 37.2
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 6.2e-28 129.0 253 37.2
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 8.1e-28 128.6 227 36.6
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 1.4e-27 127.9 227 37.0
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 1.8e-27 127.5 253 36.8
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 3.1e-27 126.7 227 37.0
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 5.2e-27 125.9 253 36.8
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 8.9e-27 125.2 252 35.3
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 8.9e-27 125.2 217 38.7
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 1.2e-26 124.8 244 33.2
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.6e-26 123.6 226 36.7
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 1.7e-25 120.9 210 34.8
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 3.7e-25 119.8 256 36.3
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 8.3e-25 118.6 229 35.8
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 8.3e-25 118.6 257 34.2
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 7.8e-23 112.1 202 38.1
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 8.1e-20 102.1 300 30.0
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.3e-19 100.5 211 34.1
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 7.6e-18 95.5 259 29.7
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 7.6e-18 95.5 359 25.9
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 1.7e-17 94.4 218 31.7
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.9e-17 93.6 210 33.3
Aa31sc309G40 Aethionema arabicum HOM05D012602 ORTHO05D003486 3.8e-17 93.2 163 39.3
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 6.4e-17 92.4 204 31.9
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.4e-16 91.3 202 30.2
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 3.2e-16 90.1 196 32.1
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 3.2e-16 90.1 207 33.3
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 4.1e-16 89.7 245 29.0
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 3.5e-15 86.7 257 30.7
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 7.8e-15 85.5 221 29.9
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.3e-14 84.7 177 30.5
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.3e-14 84.7 161 32.3
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.3e-14 84.0 263 28.9
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 3.0e-14 83.6 123 40.7
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 3.0e-14 83.6 247 30.4
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 3.9e-14 83.2 317 29.7
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 8.6e-14 82.0 117 41.9
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 1.9e-13 80.9 158 32.3
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 3.3e-13 80.1 201 30.8
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 4.3e-13 79.7 181 34.3
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 4.3e-13 79.7 293 29.7
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 4.3e-13 79.7 205 28.8
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 5.6e-13 79.3 226 33.2
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 5.6e-13 79.3 125 36.8
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 7.3e-13 79.0 206 31.6
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 9.6e-13 78.6 108 38.0
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 1.2e-12 78.2 113 35.4
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 1.6e-12 77.8 168 31.5
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 2.1e-12 77.4 197 32.5
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 2.8e-12 77.0 113 34.5
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 3.6e-12 76.6 159 29.6
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.6e-12 76.6 171 29.2
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 4.7e-12 76.3 168 34.5
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 4.7e-12 76.3 268 28.0
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 6.2e-12 75.9 307 25.4
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 1.1e-11 75.1 216 30.6
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 1.1e-11 75.1 181 31.5
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.4e-11 74.7 108 38.0
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 1.4e-11 74.7 251 29.5
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 1.4e-11 74.7 193 30.1
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 1.8e-11 74.3 203 30.0
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 1.8e-11 74.3 181 31.5
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 2.4e-11 73.9 252 28.6
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.4e-11 73.9 108 33.3
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.4e-11 73.9 171 28.7
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 4.0e-11 73.2 202 27.7
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 6.9e-11 72.4 211 29.9
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 6.9e-11 72.4 217 29.0
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.9e-11 72.4 217 28.6
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.9e-11 72.0 217 29.0
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 8.9e-11 72.0 191 31.9
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 8.9e-11 72.0 194 29.9
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.2e-10 71.6 238 27.3
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.5e-10 71.2 160 31.9
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 2.0e-10 70.9 110 36.4
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 2.0e-10 70.9 295 24.4
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 2.0e-10 70.9 216 29.2
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 3.4e-10 70.1 170 30.6
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 3.4e-10 70.1 258 29.1
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 4.4e-10 69.7 261 25.7
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 5.8e-10 69.3 113 35.4
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 5.8e-10 69.3 110 32.7
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 5.8e-10 69.3 218 27.1
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 9.9e-10 68.6 265 27.9
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 9.9e-10 68.6 109 32.1
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 9.9e-10 68.6 203 28.6
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 1.3e-09 68.2 132 31.1
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 1.7e-09 67.8 120 35.0
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 1.7e-09 67.8 170 30.0
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 1.7e-09 67.8 207 28.5
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 2.2e-09 67.4 152 30.3
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 3.8e-09 66.6 146 30.8
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 3.8e-09 66.6 106 32.1
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 4.9e-09 66.2 157 29.3
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 4.9e-09 66.2 112 32.1
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 6.4e-09 65.9 236 27.1
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 6.4e-09 65.9 122 32.0
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 8.4e-09 65.5 301 24.6
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 2.4e-08 63.9 306 24.8
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.4e-08 63.9 110 32.7
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 2.4e-08 63.9 110 32.7
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 3.2e-08 63.5 93 35.5
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 5.4e-08 62.8 97 34.0
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 7.1e-08 62.4 113 35.4
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.2e-07 61.6 137 37.2
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 2.1e-07 60.8 293 25.6
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.1e-07 60.8 106 34.9
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.7e-07 60.5 131 31.3
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.5e-07 60.1 103 30.1
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 3.5e-07 60.1 111 28.8
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 4.6e-07 59.7 184 28.8
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 4.6e-07 59.7 123 28.5
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.0e-07 59.3 243 28.0
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 6.0e-07 59.3 106 30.2
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 6.0e-07 59.3 269 26.8
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.3e-06 58.2 288 24.0
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 1.7e-06 57.8 93 34.4
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 1.7e-06 57.8 166 29.5
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.3e-06 57.4 150 30.7
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.3e-06 57.4 150 30.7
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 2.3e-06 57.4 105 33.3
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 3.9e-06 56.6 118 33.1
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 3.9e-06 56.6 118 33.1
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.6e-06 55.8 136 26.5
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 6.6e-06 55.8 75 36.0
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 8.7e-06 55.5 118 32.2


User provided reference genes

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