Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 1.5e-52 209.5 128 100.0
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 2.2e-43 179.1 124 89.5
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 1.8e-42 176.0 124 87.9
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 1.1e-39 166.8 126 80.2
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 2.3e-37 159.1 128 77.3
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 1.7e-35 152.9 126 73.0
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 6.3e-35 151.0 122 76.2
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 2.4e-34 149.1 122 75.4
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 4.1e-34 148.3 117 79.5
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 5.3e-34 147.9 126 71.4
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 1.2e-33 146.7 126 72.2
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 1.2e-33 146.7 126 72.2
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 1.5e-33 146.4 118 79.7
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 1.0e-32 143.7 127 75.6
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 1.0e-32 143.7 127 75.6
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 1.7e-32 142.9 126 71.4
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 1.1e-31 140.2 127 73.2
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 2.7e-30 135.6 121 71.9
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 3.2e-23 112.1 128 63.3
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 9.8e-12 73.9 85 63.5
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 1.7e-11 73.2 85 63.5
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 8.3e-11 70.9 131 49.6
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 8.3e-11 70.9 131 49.6
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 2.4e-10 69.3 130 50.8
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 2.4e-10 69.3 131 49.6
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 7.0e-10 67.8 145 48.3
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 1.6e-09 66.6 125 53.6
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 2.7e-09 65.9 138 39.1
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 2.7e-09 65.9 79 60.8
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 2.7e-09 65.9 79 64.6
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 3.5e-09 65.5 137 43.8
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 5.9e-09 64.7 86 60.5
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 1.3e-08 63.5 129 46.5
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 1.3e-08 63.5 81 58.0
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 2.9e-08 62.4 122 50.8
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 2.9e-08 62.4 132 46.2
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 3.8e-08 62.0 80 60.0
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 3.8e-08 62.0 132 43.9
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 3.8e-08 62.0 113 51.3
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 3.8e-08 62.0 129 49.6
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 5.0e-08 61.6 77 50.6
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 6.5e-08 61.2 77 50.6
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 8.5e-08 60.8 77 46.8
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 8.5e-08 60.8 77 57.1
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 8.5e-08 60.8 88 55.7
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 1.1e-07 60.5 88 55.7
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 1.5e-07 60.1 77 62.3
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 1.9e-07 59.7 129 47.3
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 2.5e-07 59.3 78 52.6
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 2.5e-07 59.3 89 53.9
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 3.2e-07 58.9 121 43.0
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 3.2e-07 58.9 82 54.9
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 3.2e-07 58.9 110 48.2
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 3.2e-07 58.9 118 50.8
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 4.2e-07 58.5 121 45.5
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 4.2e-07 58.5 80 60.0
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 4.2e-07 58.5 91 58.2
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 5.5e-07 58.2 126 44.4
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 7.2e-07 57.8 117 50.4
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 9.4e-07 57.4 78 47.4
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 1.2e-06 57.0 116 39.7
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 1.2e-06 57.0 81 56.8
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 2.1e-06 56.2 79 57.0
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 2.7e-06 55.8 75 61.3
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 3.6e-06 55.5 135 40.7
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 3.6e-06 55.5 37 81.1
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 4.7e-06 55.1 78 44.9
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 4.7e-06 55.1 116 37.9
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 4.7e-06 55.1 82 56.1
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 4.7e-06 55.1 133 39.8
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 4.7e-06 55.1 106 45.3
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 6.1e-06 54.7 113 49.6
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 6.1e-06 54.7 79 57.0
Ah.13g073390 Amaranthus hybridus HOM05D007607 ORTHO05D009603 8.0e-06 54.3 57 56.1


User provided reference genes

Program Settings