Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 2.3e-201 705.3 345 100.0
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 7.3e-179 630.6 345 88.7
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 2.7e-173 612.1 349 85.7
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 3.5e-173 611.7 348 86.8
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 5.1e-172 607.8 344 86.3
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 5.8e-168 594.3 349 84.0
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 9.9e-168 593.6 345 84.3
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 2.2e-167 592.4 350 83.7
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 2.2e-167 592.4 350 83.7
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 4.9e-167 591.3 336 85.7
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 4.9e-167 591.3 350 83.7
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 1.0e-164 583.6 345 81.7
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 2.6e-160 568.9 304 91.4
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 2.6e-160 568.9 347 82.1
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 1.6e-157 559.7 345 79.7
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 2.7e-157 558.9 322 85.1
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 3.9e-148 528.5 322 81.1
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 6.9e-145 517.7 349 73.6
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 3.4e-144 515.4 348 73.3
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 3.4e-144 515.4 349 72.8
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 4.5e-144 515.0 348 73.0
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 7.6e-144 514.2 341 76.2
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 2.2e-143 512.7 349 72.5
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 2.2e-143 512.7 350 74.6
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 6.4e-143 511.1 351 72.4
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 1.6e-141 506.5 350 73.4
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 2.1e-141 506.1 350 74.0
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 4.6e-141 505.0 345 71.9
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 7.9e-141 504.2 348 71.6
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 1.0e-140 503.8 348 73.0
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 3.9e-140 501.9 349 72.2
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 5.1e-140 501.5 348 72.4
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 6.7e-140 501.1 348 72.4
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 6.7e-140 501.1 351 71.8
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 6.7e-140 501.1 349 72.5
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 8.7e-140 500.7 348 71.0
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 1.9e-139 499.6 346 72.3
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 3.3e-139 498.8 349 71.6
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.3e-138 496.9 352 72.7
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 2.8e-138 495.7 340 73.8
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 3.7e-138 495.4 380 67.6
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 4.8e-138 495.0 349 71.1
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 4.8e-138 495.0 351 69.5
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.8e-138 495.0 348 71.3
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 1.4e-137 493.4 350 70.9
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 2.4e-137 492.7 341 71.6
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 5.3e-137 491.5 340 71.5
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 6.9e-137 491.1 341 70.7
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 1.2e-136 490.3 341 71.3
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 2.0e-136 489.6 349 69.3
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 2.6e-136 489.2 340 72.4
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 3.4e-136 488.8 338 71.3
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 3.4e-136 488.8 350 68.3
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.4e-136 488.8 349 69.1
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 4.5e-136 488.4 349 69.1
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 1.7e-135 486.5 337 72.1
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 2.2e-135 486.1 353 68.3
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 4.9e-135 485.0 353 68.0
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 8.4e-135 484.2 348 69.3
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 8.4e-135 484.2 348 69.0
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 1.1e-134 483.8 350 68.0
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 2.5e-134 482.6 364 67.6
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 3.2e-134 482.3 350 70.0
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 4.2e-134 481.9 341 70.4
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 5.5e-134 481.5 341 70.1
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 9.3e-134 480.7 350 69.1
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 9.3e-134 480.7 353 67.7
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.6e-133 479.9 380 65.8
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 1.6e-133 479.9 348 69.8
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 2.7e-133 479.2 342 70.2
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 3.5e-133 478.8 342 69.6
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 4.6e-133 478.4 349 68.5
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.3e-132 476.9 341 70.1
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 1.3e-132 476.9 341 69.8
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 1.8e-132 476.5 350 68.3
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 3.0e-132 475.7 350 69.1
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 1.9e-131 473.0 350 68.3
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 2.5e-131 472.6 349 69.9
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 1.6e-130 469.9 322 73.9
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 1.6e-130 469.9 345 68.1
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 2.1e-130 469.5 349 70.2
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 4.1e-129 465.3 342 68.4
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 6.9e-129 464.5 349 67.9
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 1.2e-128 463.8 340 68.8
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.5e-128 463.4 342 68.1
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 1.5e-128 463.4 351 67.5
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 2.6e-128 462.6 328 68.9
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 1.7e-127 459.9 346 66.8
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 5.0e-127 458.4 354 65.8
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 6.5e-127 458.0 350 65.7
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 8.5e-127 457.6 351 65.8
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 1.9e-126 456.4 409 59.4
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 3.2e-126 455.7 289 73.7
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 4.2e-126 455.3 347 64.8
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 7.2e-126 454.5 342 65.8
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 6.1e-125 451.4 334 68.6
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 1.5e-123 446.8 341 63.9
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 3.3e-123 445.7 338 67.5
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 5.7e-123 444.9 348 62.4
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 1.3e-122 443.7 340 66.5
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 2.6e-120 436.0 302 72.5
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 2.6e-120 436.0 345 65.5
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 6.3e-114 414.8 342 62.9
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 4.5e-112 408.7 232 80.2
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.0e-111 407.5 246 76.0
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 2.9e-111 406.0 246 75.2
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 1.9e-110 403.3 247 75.3
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 3.2e-110 402.5 233 82.8
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 5.5e-102 375.2 306 59.8
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 4.0e-100 369.0 325 59.7
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 7.0e-97 358.2 332 55.7
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 3.6e-93 345.9 257 72.8
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 3.7e-90 335.9 243 65.4
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 3.7e-82 309.3 322 51.6
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 1.8e-81 307.0 246 67.9
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 9.2e-81 304.7 244 65.6
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.6e-80 303.9 245 65.7
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.0e-80 303.5 245 65.7
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 4.5e-80 302.4 244 66.4
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 1.1e-65 254.6 173 70.5
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 3.6e-61 239.6 333 42.3
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 1.3e-58 231.1 162 68.5
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 2.8e-53 213.4 199 53.3
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 6.2e-53 212.2 193 58.0
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 2.4e-52 210.3 194 56.7
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 5.2e-52 209.1 174 58.6
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.7e-48 196.8 160 62.5
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 2.6e-27 127.1 73 82.2
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 6.4e-26 122.5 79 72.2
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 3.1e-20 103.6 57 75.4
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 7.2e-09 65.9 53 62.3


User provided reference genes

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