Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR020550 Cardamine hirsuta HOM05D009961 ORTHO05D008483 2.6e-104 382.1 195 100.0
AT1G20070 Arabidopsis thaliana HOM05D009961 ORTHO05D008483 2.0e-80 302.8 195 82.1
AL1G32880 Arabidopsis lyrata HOM05D009961 ORTHO05D008483 2.8e-79 298.9 195 80.0
A07p16020 Brassica napus HOM05D009961 ORTHO05D008483 1.2e-77 293.5 196 79.6
Carub.0001s1960 Capsella rubella HOM05D009961 ORTHO05D008483 3.5e-77 292.0 196 79.6
BolC7t42871H Brassica oleracea HOM05D009961 ORTHO05D008483 1.0e-76 290.4 195 79.0
BraA07t29330Z Brassica rapa HOM05D009961 ORTHO05D008483 1.0e-76 290.4 196 78.6
Thhalv10008606m.g Eutrema salsugineum HOM05D009961 ORTHO05D008483 9.5e-75 283.9 194 81.4
Sp1g17840 Schrenkiella parvula HOM05D009961 ORTHO05D008483 2.1e-74 282.7 197 78.7
A06p16220 Brassica napus HOM05D009961 ORTHO05D008483 3.4e-72 275.4 197 77.2
C07p23380 Brassica napus HOM05D009961 ORTHO05D008483 1.1e-70 270.4 183 78.7
BcaB07g32022 Brassica carinata HOM05D009961 ORTHO05D008483 2.7e-69 265.8 197 74.6
BcaC05g25901 Brassica carinata HOM05D009961 ORTHO05D008483 4.7e-66 255.0 198 73.7
C05p18560 Brassica napus HOM05D009961 ORTHO05D008483 4.7e-66 255.0 198 73.7
BolC5t30567H Brassica oleracea HOM05D009961 ORTHO05D008483 1.4e-65 253.4 198 73.2
BraA06t24726Z Brassica rapa HOM05D009961 ORTHO05D008483 3.4e-64 248.8 198 71.7
BcaB03g14337 Brassica carinata HOM05D009961 ORTHO05D008483 4.9e-63 245.0 196 73.0
C08p19900 Brassica napus HOM05D009961 ORTHO05D008483 5.2e-57 224.9 196 66.8
BolC8t49628H Brassica oleracea HOM05D009961 ORTHO05D008483 5.2e-57 224.9 196 66.8
Aa31LG7G4510 Aethionema arabicum HOM05D009961 ORTHO05D008483 7.5e-56 221.1 225 62.2
BcaC07g39017 Brassica carinata HOM05D009961 ORTHO05D008483 7.5e-56 221.1 196 66.8
BraA08t34889Z Brassica rapa HOM05D009961 ORTHO05D008483 1.4e-54 216.9 180 67.8
A08p29520 Brassica napus HOM05D009961 ORTHO05D008483 6.4e-47 191.4 196 59.7
THA.LOC104811421 Tarenaya hassleriana HOM05D009961 ORTHO05D008483 2.1e-26 123.2 203 45.8
BcaC05g25906 Brassica carinata HOM05D009961 ORTHO05D008483 1.1e-17 94.4 144 48.6
Cpa.g.sc26.305 Carica papaya HOM05D007731 ORTHO05D008483 5.1e-12 75.5 240 34.2
CSS0037397 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 5.6e-11 72.0 209 32.1
PGR031G1853 Punica granatum HOM05D007731 ORTHO05D008483 2.1e-10 70.1 158 35.4
Rhsim06G0019700 Rhododendron simsii HOM05D007731 ORTHO05D008483 1.4e-09 67.4 91 46.2
Gohir.A02G083100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.8e-09 67.0 221 33.5
arahy.Tifrunner.gnm1.ann1.WY2XWP Arachis hypogaea HOM05D007731 ORTHO05D008483 2.4e-09 66.6 144 34.7
Gohir.D02G098500 Gossypium hirsutum HOM05D007731 ORTHO05D008483 2.4e-09 66.6 227 34.4
Thecc.08G047100 Theobroma cacao HOM05D007731 ORTHO05D008483 3.1e-09 66.2 251 29.9
MSTRG.25262 Avicennia marina HOM05D007731 ORTHO05D008483 4.0e-09 65.9 240 28.8
Sabra02G0016000 Salix brachista HOM05D007731 ORTHO05D008483 4.0e-09 65.9 239 32.2
TAR628G0423 Trochodendron aralioides HOM05D007731 ORTHO05D008483 5.3e-09 65.5 240 31.7
TAR376G0482 Trochodendron aralioides HOM05D007731 ORTHO05D008483 9.0e-09 64.7 232 28.0
CSS0031900 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 1.2e-08 64.3 206 32.0
Cfa013976 Carpinus fangiana HOM05D007731 ORTHO05D008483 1.2e-08 64.3 47 63.8
Duzib093G0569 Durio zibethinus HOM05D007731 ORTHO05D008483 1.5e-08 63.9 254 31.9
CSS0046256 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 2.0e-08 63.5 234 31.2
CANSAT25G3722 Cannabis sativa HOM05D007731 ORTHO05D008483 2.0e-08 63.5 165 37.0
Gorai.005G112400 Gossypium raimondii HOM05D007731 ORTHO05D008483 2.0e-08 63.5 227 33.9
arahy.Tifrunner.gnm1.ann1.3IU0NQ Arachis hypogaea HOM05D007731 ORTHO05D008483 3.4e-08 62.8 207 30.0
COL.COLO4_26124 Corchorus olitorius HOM05D007731 ORTHO05D008483 3.4e-08 62.8 168 35.1
Cc00_g29330 Coffea canephora HOM05D007731 ORTHO05D008483 5.8e-08 62.0 249 34.1
Manes.05G145300 Manihot esculenta HOM05D007731 ORTHO05D008483 5.8e-08 62.0 249 29.3
Ciclev10002425m.g Citrus clementina HOM05D007731 ORTHO05D008483 7.6e-08 61.6 231 29.0
RcHm_v2.0_Chr6g0303181 Rosa chinensis HOM05D007731 ORTHO05D008483 7.6e-08 61.6 245 30.6
Haze_22661 Corylus avellana HOM05D007731 ORTHO05D008483 1.0e-07 61.2 47 61.7
CSS0005102 Camellia sinensis var. sinensis HOM05D007731 ORTHO05D008483 2.2e-07 60.1 232 31.9
Nn5g30769 Nelumbo nucifera HOM05D007731 ORTHO05D008483 2.2e-07 60.1 48 58.3
Psat0s2878g0040 Pisum sativum HOM05D007731 ORTHO05D008483 2.2e-07 60.1 190 31.6
QL02p012129 Quercus lobata HOM05D007731 ORTHO05D008483 2.2e-07 60.1 238 29.4
CiPaw.07G147300 Carya illinoinensis HOM05D007731 ORTHO05D008483 3.8e-07 59.3 47 59.6
Rhsim06G0016400 Rhododendron simsii HOM05D007731 ORTHO05D008483 3.8e-07 59.3 203 32.0
Dinv39536 Davidia involucrata HOM05D007731 ORTHO05D008483 4.9e-07 58.9 158 32.9
Lj1g0026139 Lotus japonicus HOM05D007731 ORTHO05D008483 4.9e-07 58.9 187 31.6
Phvul.009G009600 Phaseolus vulgaris HOM05D007731 ORTHO05D008483 8.4e-07 58.2 144 34.0
Sabra05G0187200 Salix brachista HOM05D007731 ORTHO05D008483 8.4e-07 58.2 55 56.4
Potri.002G019700 Populus trichocarpa HOM05D007731 ORTHO05D008483 1.1e-06 57.8 240 32.1
Hma1.2p1_0733F.1_g210180 Hydrangea macrophylla HOM05D007731 ORTHO05D008483 1.4e-06 57.4 218 29.4
TWI56G0526 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 1.4e-06 57.4 185 31.4
Gohir.A01G110400 Gossypium hirsutum HOM05D007731 ORTHO05D008483 1.9e-06 57.0 215 30.7
Lalb_Chr23g0266081 Lupinus albus HOM05D007731 ORTHO05D008483 1.9e-06 57.0 190 32.1
Medtr3g113660 Medicago truncatula HOM05D007731 ORTHO05D008483 1.9e-06 57.0 179 31.8
TPR.G34549 Trifolium pratense HOM05D007731 ORTHO05D008483 1.9e-06 57.0 153 35.9
ECA233G0921 Erigeron canadensis HOM05D007731 ORTHO05D008483 2.5e-06 56.6 191 31.9
Lsat_1_v5_gn_8_30081 Lactuca sativa HOM05D007731 ORTHO05D008483 2.5e-06 56.6 58 51.7
Gorai.009G193400 Gossypium raimondii HOM05D007731 ORTHO05D008483 3.2e-06 56.2 254 29.1
Aqoxy6G02285 Aquilegia oxysepala HOM05D007731 ORTHO05D008483 4.2e-06 55.8 54 55.6
Eucgr.H00961 Eucalyptus grandis HOM05D007731 ORTHO05D008483 4.2e-06 55.8 52 55.8
Potri.005G241800 Populus trichocarpa HOM05D007731 ORTHO05D008483 5.5e-06 55.5 154 33.1
VMungo1309G0548 Vigna mungo HOM05D007731 ORTHO05D008483 5.5e-06 55.5 144 35.4
Glyma.04G023500 Glycine max HOM05D007731 ORTHO05D008483 7.1e-06 55.1 209 31.6
Sopen04g035340 Solanum pennellii HOM05D007731 ORTHO05D008483 7.1e-06 55.1 46 65.2
PGSC0003DMG400009876 Solanum tuberosum HOM05D007731 ORTHO05D008483 7.1e-06 55.1 46 65.2
SGA_v2.0_scaffold92G28205 Striga asiatica HOM05D007731 ORTHO05D008483 7.1e-06 55.1 201 31.8
CiPaw.08G067400 Carya illinoinensis HOM05D007731 ORTHO05D008483 9.3e-06 54.7 142 31.0
Gohir.D05G188100 Gossypium hirsutum HOM05D007731 ORTHO05D008483 9.3e-06 54.7 190 31.1
TWI12G0892 Tripterygium wilfordii HOM05D007731 ORTHO05D008483 9.3e-06 54.7 169 34.9


User provided reference genes

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