Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 1.1e-122 443.4 222 100.0
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 7.1e-111 404.1 222 89.6
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 5.1e-109 397.9 222 87.8
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 1.6e-107 392.9 222 85.6
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 5.3e-106 387.9 222 86.0
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 1.2e-105 386.7 227 84.6
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 4.5e-105 384.8 222 85.6
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 5.9e-105 384.4 224 84.8
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 7.6e-105 384.0 221 85.1
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 1.0e-104 383.6 221 85.1
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 3.8e-104 381.7 221 84.6
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 3.8e-104 381.7 221 84.6
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 6.5e-104 380.9 221 84.2
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 9.3e-103 377.1 224 83.0
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 3.5e-102 375.2 220 84.5
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 4.3e-100 368.2 219 82.2
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 2.8e-99 365.5 219 79.0
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 4.6e-94 348.2 202 86.1
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 1.5e-92 343.2 197 85.8
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 6.3e-91 337.8 224 77.2
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 2.0e-89 332.8 224 76.8
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 6.1e-86 321.2 219 72.6
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.5e-84 316.6 219 71.7
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 3.3e-84 315.5 219 71.2
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 5.7e-84 314.7 219 70.8
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 2.8e-83 312.4 208 72.6
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.8e-82 309.7 222 69.8
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 4.1e-82 308.5 203 73.9
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 5.3e-82 308.1 225 68.0
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 5.3e-82 308.1 219 69.4
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 1.2e-81 307.0 220 70.0
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 2.0e-81 306.2 220 70.5
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 2.6e-81 305.8 208 68.8
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 2.6e-81 305.8 213 70.0
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 7.7e-81 304.3 207 76.8
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 7.7e-81 304.3 218 69.3
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 7.7e-81 304.3 208 71.2
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 7.7e-81 304.3 219 68.9
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 1.0e-80 303.9 208 71.2
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 1.0e-80 303.9 221 70.1
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.7e-80 303.1 219 68.5
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 1.7e-80 303.1 221 69.7
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 1.7e-80 303.1 218 70.2
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 1.7e-80 303.1 222 68.9
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 1.7e-80 303.1 214 69.6
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 3.8e-80 302.0 216 67.1
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 6.5e-80 301.2 218 66.5
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 8.5e-80 300.8 223 72.6
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 1.1e-79 300.4 214 69.2
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 1.5e-79 300.1 219 68.5
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.9e-79 299.7 204 72.1
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 2.5e-79 299.3 220 64.5
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 3.2e-79 298.9 220 68.2
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 3.2e-79 298.9 213 69.5
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 3.2e-79 298.9 221 69.2
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 4.2e-79 298.5 206 72.8
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 1.6e-78 296.6 222 69.8
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.1e-78 296.2 224 68.3
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 2.7e-78 295.8 218 64.7
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 2.7e-78 295.8 222 69.8
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 3.6e-78 295.4 217 65.0
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 4.7e-78 295.0 219 67.6
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 8.0e-78 294.3 206 70.9
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 1.0e-77 293.9 223 66.4
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 3.0e-77 292.4 215 66.0
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 6.7e-77 291.2 204 70.1
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 1.1e-76 290.4 204 71.1
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.1e-76 290.4 204 71.1
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 2.0e-76 289.7 219 65.8
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 2.0e-76 289.7 219 65.8
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 2.0e-76 289.7 213 67.1
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 5.7e-76 288.1 220 66.8
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 7.5e-76 287.7 203 69.0
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.3e-75 287.0 204 70.1
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 1.7e-75 286.6 218 63.8
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 1.4e-74 283.5 219 63.5
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 1.8e-74 283.1 214 64.5
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 2.4e-74 282.7 215 64.7
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 2.4e-74 282.7 215 64.2
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 4.1e-74 282.0 206 67.0
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 9.1e-74 280.8 215 64.2
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 1.2e-73 280.4 215 64.2
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.0e-73 279.6 217 64.5
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.0e-73 279.6 215 65.1
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 4.5e-73 278.5 202 67.8
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 4.5e-73 278.5 217 64.1
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 7.7e-73 277.7 215 64.7
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 7.7e-73 277.7 215 63.3
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 3.8e-72 275.4 215 62.8
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 8.5e-72 274.2 223 67.7
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 7.2e-71 271.2 218 62.4
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 9.4e-71 270.8 220 61.4
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 1.2e-70 270.4 219 61.2
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 1.6e-70 270.0 220 60.9
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 2.1e-70 269.6 213 61.5
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 2.7e-70 269.2 202 64.9
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 3.6e-70 268.9 217 62.7
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 3.6e-70 268.9 219 63.9
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 3.0e-69 265.8 186 74.2
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 6.8e-69 264.6 204 64.7
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 1.5e-68 263.5 174 74.1
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 2.0e-68 263.1 203 62.1
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.4e-68 261.9 199 67.8
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 9.8e-68 260.8 203 63.5
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 3.7e-67 258.8 207 60.4
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 6.3e-67 258.1 261 54.4
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 1.1e-66 257.3 223 60.1
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 1.1e-66 257.3 203 65.5
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 3.5e-65 252.3 210 57.1
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 4.5e-65 251.9 172 70.9
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 3.8e-64 248.8 179 70.4
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 1.1e-63 247.3 189 67.7
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.1e-63 247.3 218 55.0
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 1.2e-60 237.3 148 77.0
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 9.8e-60 234.2 206 56.8
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.2e-59 233.0 192 58.9
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.2e-59 233.0 192 58.9
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 1.4e-58 230.3 209 56.9
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 3.1e-58 229.2 194 60.3
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.1e-58 228.8 205 56.1
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 4.5e-57 225.3 154 72.1
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 5.9e-57 224.9 167 68.3
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 2.3e-56 223.0 156 71.8
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 1.5e-55 220.3 215 49.3
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.1e-54 216.5 153 68.0
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.8e-54 216.1 220 50.0
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 2.8e-54 216.1 217 54.4
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 1.5e-52 210.3 207 55.6
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 3.4e-52 209.1 215 51.6
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 4.4e-52 208.8 171 59.1
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 4.9e-51 205.3 220 46.8
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 3.2e-50 202.6 202 50.0
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.0e-49 199.9 217 53.0
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 8.6e-48 194.5 207 45.9
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.7e-46 188.7 165 53.9
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 3.0e-40 169.5 109 76.1
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.9e-39 166.8 205 46.8
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 7.3e-39 164.9 207 41.1
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 2.1e-38 163.3 214 43.9
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 6.2e-38 161.8 104 77.9
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 1.5e-36 157.1 207 40.1
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 1.5e-36 157.1 161 48.4
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 2.6e-36 156.4 218 39.4
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 3.0e-32 142.9 129 60.5
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 4.3e-31 139.0 206 38.8
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 1.2e-30 137.5 85 74.1
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 6.2e-30 135.2 201 38.8
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 2.3e-29 133.3 101 65.3
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 4.1e-26 122.5 180 45.0
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 7.8e-25 118.2 70 78.6
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 1.2e-22 110.9 129 41.1
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 5.2e-21 105.5 81 60.5
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.9e-18 97.1 94 54.3
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 3.9e-16 89.4 202 37.1
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 8.1e-14 81.6 63 68.3
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 2.2e-11 73.6 88 44.3
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 2.3e-08 63.5 40 77.5
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 1.3e-06 57.8 52 53.8


User provided reference genes

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