Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 2.9e-168 595.1 293 100.0
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 1.5e-140 503.1 277 87.4
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 2.5e-140 502.3 277 87.7
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 3.7e-139 498.4 278 86.7
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 6.9e-138 494.2 277 87.0
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 2.0e-137 492.7 277 86.6
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 4.5e-137 491.5 278 87.1
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 1.7e-136 489.6 277 85.9
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 2.9e-136 488.8 277 85.2
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 8.5e-136 487.3 277 85.6
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 9.4e-135 483.8 279 84.6
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 6.5e-120 434.5 278 74.8
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 6.1e-118 427.9 277 75.5
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 1.9e-95 353.2 275 61.5
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 7.2e-95 351.3 278 59.0
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 3.6e-94 349.0 275 60.4
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 1.0e-93 347.4 277 59.2
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 2.3e-93 346.3 274 60.2
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 4.0e-93 345.5 271 59.4
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 4.0e-93 345.5 275 60.7
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 2.0e-92 343.2 276 59.4
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 7.5e-92 341.3 283 59.0
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 9.8e-92 340.9 281 59.1
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 2.2e-91 339.7 277 58.1
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 2.8e-91 339.3 274 58.8
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 2.8e-91 339.3 278 58.3
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 2.8e-91 339.3 275 58.5
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 6.3e-91 338.2 277 56.7
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 8.3e-91 337.8 283 59.0
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 2.4e-90 336.3 284 57.7
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 4.1e-90 335.5 284 56.3
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 5.4e-90 335.1 282 56.4
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 5.4e-90 335.1 272 58.5
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 7.0e-90 334.7 284 57.0
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 9.2e-90 334.3 280 56.1
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 1.6e-89 333.6 278 59.7
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 1.6e-89 333.6 283 56.5
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 2.0e-89 333.2 281 56.9
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 2.0e-89 333.2 281 56.9
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 2.7e-89 332.8 270 59.6
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 2.7e-89 332.8 275 57.5
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 2.7e-89 332.8 278 55.8
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 3.5e-89 332.4 278 57.9
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 3.5e-89 332.4 282 57.1
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 1.3e-88 330.5 277 58.1
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 2.3e-88 329.7 276 57.6
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 2.3e-88 329.7 277 58.1
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 2.3e-88 329.7 276 56.2
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 2.9e-88 329.3 281 55.9
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 8.6e-88 327.8 279 56.6
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 8.6e-88 327.8 281 55.9
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 1.5e-87 327.0 282 57.4
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 2.5e-87 326.2 292 55.1
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 3.3e-87 325.9 278 56.5
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 5.6e-87 325.1 277 58.1
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 7.3e-87 324.7 281 54.4
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 7.3e-87 324.7 276 57.2
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 2.8e-86 322.8 280 55.4
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 2.8e-86 322.8 276 54.0
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 1.4e-85 320.5 274 56.2
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 1.8e-85 320.1 283 59.0
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 1.8e-85 320.1 271 57.6
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 2.3e-85 319.7 272 56.6
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 3.1e-85 319.3 276 56.2
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 5.2e-85 318.5 274 56.2
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 6.8e-85 318.2 280 56.1
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 8.9e-85 317.8 290 53.1
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 9.8e-84 314.3 247 61.5
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 2.2e-83 313.2 276 54.3
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 2.2e-83 313.2 250 58.8
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 6.4e-83 311.6 320 50.3
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.4e-82 310.5 303 52.1
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 2.4e-82 309.7 281 56.2
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 4.1e-82 308.9 244 58.6
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 7.0e-82 308.1 292 51.7
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 1.2e-81 307.4 244 59.8
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 3.5e-81 305.8 246 62.2
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.0e-80 304.3 299 51.2
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 1.7e-80 303.5 277 54.2
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 8.6e-80 301.2 276 52.5
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 4.3e-79 298.9 280 53.6
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 5.6e-79 298.5 266 54.1
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 1.2e-78 297.4 252 55.2
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 3.4e-76 289.3 270 53.7
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 3.4e-76 289.3 273 51.6
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 9.8e-76 287.7 267 53.2
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 1.6e-73 280.4 280 51.4
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 4.6e-73 278.9 221 57.9
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 3.0e-72 276.2 221 57.0
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 2.3e-69 266.5 360 41.4
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 1.5e-68 263.8 317 48.3
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 1.5e-68 263.8 218 56.9
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 2.0e-68 263.5 253 50.2
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 3.7e-67 259.2 274 49.6
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 7.3e-63 245.0 276 46.0
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 6.8e-61 238.4 190 62.1
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 3.8e-59 232.6 259 45.2
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 2.3e-56 223.4 278 44.2
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 1.4e-53 214.2 286 41.6
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 5.3e-53 212.2 226 47.3
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 2.9e-51 206.5 277 43.7
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 4.2e-50 202.6 274 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 1.6e-49 200.7 283 40.6
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 1.9e-47 193.7 169 57.4
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 1.8e-40 170.6 315 35.2
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 5.3e-37 159.1 380 32.9
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 1.9e-26 124.0 108 50.9
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 1.6e-25 120.9 267 33.0
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 1.8e-24 117.5 191 39.3
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 9.4e-18 95.1 83 56.6
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.6e-17 93.2 65 58.5
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 1.5e-12 77.8 114 38.6
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 4.5e-12 76.3 64 53.1
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 2.7e-09 67.0 91 39.6


User provided reference genes

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