Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR017680 Cardamine hirsuta HOM05D004052 ORTHO05D004694 2.2e-193 679.1 423 100.0
AL1G29350 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 5.3e-139 498.4 348 89.4
Sp1g15260 Schrenkiella parvula HOM05D004052 ORTHO05D004694 2.1e-135 486.5 348 85.9
AT1G17140 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 4.4e-125 452.2 348 84.2
BcaC07g41402 Brassica carinata HOM05D004052 ORTHO05D004694 3.4e-122 442.6 353 81.9
C05p15490 Brassica napus HOM05D004052 ORTHO05D004694 3.2e-120 436.0 379 78.6
A09p60580 Brassica napus HOM05D004052 ORTHO05D004694 5.5e-120 435.3 348 82.2
C08p44040 Brassica napus HOM05D004052 ORTHO05D004694 2.3e-118 429.9 348 80.5
BcaC07g41439 Brassica carinata HOM05D004052 ORTHO05D004694 6.7e-118 428.3 352 80.4
BraA09t41428Z Brassica rapa HOM05D004052 ORTHO05D004694 6.7e-118 428.3 348 81.3
BolC8t51952H Brassica oleracea HOM05D004052 ORTHO05D004694 7.4e-117 424.9 348 80.7
BraA06t24462Z Brassica rapa HOM05D004052 ORTHO05D004694 1.3e-116 424.1 378 77.2
Thhalv10008080m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 3.7e-116 422.5 350 80.6
A06p13030 Brassica napus HOM05D004052 ORTHO05D004694 4.8e-116 422.2 346 74.0
BcaC05g25666 Brassica carinata HOM05D004052 ORTHO05D004694 7.0e-115 418.3 350 78.9
Carub.0001s1687 Capsella rubella HOM05D004052 ORTHO05D004694 4.7e-111 405.6 349 78.8
BolC5t30258H Brassica oleracea HOM05D004052 ORTHO05D004694 1.7e-108 397.1 378 73.8
Aa31LG7G1980 Aethionema arabicum HOM05D004052 ORTHO05D004694 1.8e-107 393.7 350 72.0
BcaB03g13016 Brassica carinata HOM05D004052 ORTHO05D004694 2.8e-92 343.2 345 73.6
BcaB07g34049 Brassica carinata HOM05D004052 ORTHO05D004694 3.8e-89 332.8 350 70.9
BcaC07g38832 Brassica carinata HOM05D004052 ORTHO05D004694 3.7e-84 316.2 351 68.7
BolC8t49398H Brassica oleracea HOM05D004052 ORTHO05D004694 1.3e-81 307.8 347 68.3
C08p17720 Brassica napus HOM05D004052 ORTHO05D004694 5.0e-81 305.8 344 68.3
AT1G78430 Arabidopsis thaliana HOM05D004052 ORTHO05D004694 2.4e-75 287.0 355 58.0
THA.LOC104812292 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 3.5e-74 283.1 360 61.7
AL2G38800 Arabidopsis lyrata HOM05D004052 ORTHO05D004694 1.6e-71 274.2 355 58.0
MD05G1208600 Malus domestica HOM05D004052 ORTHO05D004694 2.9e-68 263.5 393 48.3
A08p31110 Brassica napus HOM05D004052 ORTHO05D004694 3.7e-68 263.1 347 64.0
BraA08t35037Z Brassica rapa HOM05D004052 ORTHO05D004694 3.7e-68 263.1 347 64.0
Prupe.4G148800 Prunus persica HOM05D004052 ORTHO05D004694 3.2e-67 260.0 395 48.9
BraA07t30394Z Brassica rapa HOM05D004052 ORTHO05D004694 4.1e-67 259.6 346 51.4
A07p27520 Brassica napus HOM05D004052 ORTHO05D004694 7.1e-67 258.8 346 51.4
Thhalv10019440m.g Eutrema salsugineum HOM05D004052 ORTHO05D004694 7.1e-67 258.8 346 62.1
BolC6t38209H Brassica oleracea HOM05D004052 ORTHO05D004694 1.2e-66 258.1 347 52.4
GSVIVG01038086001 Vitis vinifera HOM05D004052 ORTHO05D004694 7.8e-66 255.4 372 51.1
C06p30460 Brassica napus HOM05D004052 ORTHO05D004694 1.7e-65 254.2 347 53.6
QL04p070259 Quercus lobata HOM05D004052 ORTHO05D004694 2.3e-65 253.8 393 47.8
Ciclev10020573m.g Citrus clementina HOM05D004052 ORTHO05D004694 6.6e-65 252.3 390 54.4
Aa31LG4G2530 Aethionema arabicum HOM05D004052 ORTHO05D004694 8.6e-65 251.9 350 51.4
FAN16G0069 Fragaria x ananassa HOM05D004052 ORTHO05D004694 8.6e-65 251.9 387 48.6
THA.LOC104808079 Tarenaya hassleriana HOM05D004052 ORTHO05D004694 1.1e-64 251.5 359 58.2
FAN21G2550 Fragaria x ananassa HOM05D004052 ORTHO05D004694 4.3e-64 249.6 387 48.3
FvH4_3g16600 Fragaria vesca HOM05D004052 ORTHO05D004694 7.3e-64 248.8 387 48.3
Carub.0002s2533 Capsella rubella HOM05D004052 ORTHO05D004694 1.1e-62 245.0 356 59.6
FAN11G2946 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.4e-62 244.6 372 48.7
Manes.15G101600 Manihot esculenta HOM05D004052 ORTHO05D004694 4.4e-61 239.6 395 46.8
BcaB02g07171 Brassica carinata HOM05D004052 ORTHO05D004694 1.3e-60 238.0 356 55.1
MD10G1195100 Malus domestica HOM05D004052 ORTHO05D004694 1.3e-60 238.0 391 47.6
Cpa.g.sc77.96 Carica papaya HOM05D004052 ORTHO05D004694 1.7e-60 237.7 363 46.0
RcHm_v2.0_Chr5g0027741 Rosa chinensis HOM05D004052 ORTHO05D004694 2.9e-60 236.9 387 47.0
CARHR071950 Cardamine hirsuta HOM05D004052 ORTHO05D004694 3.8e-60 236.5 352 58.8
Lsat_1_v5_gn_5_125041 Lactuca sativa HOM05D004052 ORTHO05D004694 3.8e-60 236.5 370 52.2
Gohir.A01G041900 Gossypium hirsutum HOM05D004052 ORTHO05D004694 7.1e-59 232.3 388 54.9
Glyma.13G259200 Glycine max HOM05D004052 ORTHO05D004694 2.1e-58 230.7 383 49.1
Duzib213G0683 Durio zibethinus HOM05D004052 ORTHO05D004694 7.8e-58 228.8 391 54.5
Atru.chr2.1894 Acer truncatum HOM05D004052 ORTHO05D004694 1.0e-57 228.4 388 49.2
Dinv13312 Davidia involucrata HOM05D004052 ORTHO05D004694 3.0e-57 226.9 376 54.0
Gohir.D01G029700 Gossypium hirsutum HOM05D004052 ORTHO05D004694 5.1e-57 226.1 389 51.2
Potri.001G377900 Populus trichocarpa HOM05D004052 ORTHO05D004694 1.5e-56 224.6 383 44.6
Sabra16G0248900 Salix brachista HOM05D004052 ORTHO05D004694 1.5e-56 224.6 377 46.9
Phvul.005G060700 Phaseolus vulgaris HOM05D004052 ORTHO05D004694 1.9e-56 224.2 386 47.7
CSS0033427 Camellia sinensis var. sinensis HOM05D004052 ORTHO05D004694 3.3e-56 223.4 390 52.1
COL.COLO4_17418 Corchorus olitorius HOM05D004052 ORTHO05D004694 3.3e-56 223.4 379 54.1
Gorai.002G038800 Gossypium raimondii HOM05D004052 ORTHO05D004694 7.3e-56 222.2 391 50.1
RhsimUnG0204400 Rhododendron simsii HOM05D004052 ORTHO05D004694 9.6e-56 221.9 371 53.9
Actinidia04591 Actinidia chinensis HOM05D004052 ORTHO05D004694 2.1e-55 220.7 381 53.8
CANSAT94G0014 Cannabis sativa HOM05D004052 ORTHO05D004694 2.8e-55 220.3 389 50.6
Ca_03392_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 1.8e-54 217.6 376 43.6
Ca_29679_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 1.8e-54 217.6 376 43.6
Cc05_g10320 Coffea canephora HOM05D004052 ORTHO05D004694 2.4e-54 217.2 391 52.4
ECA234G3832 Erigeron canadensis HOM05D004052 ORTHO05D004694 5.3e-54 216.1 373 45.0
Actinidia35175 Actinidia chinensis HOM05D004052 ORTHO05D004694 6.9e-54 215.7 370 55.1
Thecc.07G146300 Theobroma cacao HOM05D004052 ORTHO05D004694 1.5e-53 214.5 389 52.2
TAR629G3304 Trochodendron aralioides HOM05D004052 ORTHO05D004694 1.5e-53 214.5 384 45.6
vmacro09432 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 2.0e-53 214.2 379 51.7
Nitab4.5_0001662g0050 Nicotiana tabacum HOM05D004052 ORTHO05D004694 2.6e-53 213.8 380 48.9
Lalb_Chr25g0285401 Lupinus albus HOM05D004052 ORTHO05D004694 3.4e-53 213.4 382 52.1
Gohir.A07G155810 Gossypium hirsutum HOM05D004052 ORTHO05D004694 7.6e-53 212.2 369 49.1
Gorai.009G359700 Gossypium raimondii HOM05D004052 ORTHO05D004694 1.1e-51 208.4 370 44.3
Eucgr.F03205 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.9e-51 207.6 390 51.0
Gohir.A04G046520 Gossypium hirsutum HOM05D004052 ORTHO05D004694 2.4e-51 207.2 368 44.3
arahy.Tifrunner.gnm1.ann1.15VG0N Arachis hypogaea HOM05D004052 ORTHO05D004694 9.3e-51 205.3 392 50.0
Haze_08491 Corylus avellana HOM05D004052 ORTHO05D004694 9.3e-51 205.3 442 43.0
Eucgr.L01921 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.6e-50 204.5 377 43.2
Glyma.15G248900 Glycine max HOM05D004052 ORTHO05D004694 2.1e-50 204.1 386 43.8
CiPaw.12G045700 Carya illinoinensis HOM05D004052 ORTHO05D004694 3.5e-50 203.4 393 52.7
Medtr2g070730 Medicago truncatula HOM05D004052 ORTHO05D004694 3.5e-50 203.4 385 45.7
arahy.Tifrunner.gnm1.ann1.SLVF1G Arachis hypogaea HOM05D004052 ORTHO05D004694 1.0e-49 201.8 392 49.7
Cfa019455 Carpinus fangiana HOM05D004052 ORTHO05D004694 1.7e-49 201.1 437 46.2
Eucgr.L01015 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.7e-49 201.1 331 45.9
MSTRG.12848 Avicennia marina HOM05D004052 ORTHO05D004694 3.0e-49 200.3 394 42.6
Eucgr.E02731 Eucalyptus grandis HOM05D004052 ORTHO05D004694 1.1e-48 198.4 368 41.6
PGSC0003DMG400027647 Solanum tuberosum HOM05D004052 ORTHO05D004694 1.5e-48 198.0 378 53.2
Manes.03G091016 Manihot esculenta HOM05D004052 ORTHO05D004694 2.5e-48 197.2 393 42.7
Rhsim06G0184900 Rhododendron simsii HOM05D004052 ORTHO05D004694 4.3e-48 196.4 375 48.8
HanXRQChr12g0373561 Helianthus annuus HOM05D004052 ORTHO05D004694 9.6e-48 195.3 378 43.1
vmacro12015 Vaccinium macrocarpon HOM05D004052 ORTHO05D004694 9.6e-48 195.3 351 49.9
Hma1.2p1_1456F.1_g284600 Hydrangea macrophylla HOM05D004052 ORTHO05D004694 1.3e-47 194.9 370 50.5
MBI10_g30421_MAGBIO Magnolia biondii HOM05D004052 ORTHO05D004694 3.6e-47 193.4 400 41.2
CAN.G1003.5 Capsicum annuum HOM05D004052 ORTHO05D004694 4.8e-47 193.0 375 50.1
VMungo1080G1119 Vigna mungo HOM05D004052 ORTHO05D004694 6.2e-47 192.6 386 45.1
Dinv26667 Davidia involucrata HOM05D004052 ORTHO05D004694 8.1e-47 192.2 339 52.5
Lj3g0022433 Lotus japonicus HOM05D004052 ORTHO05D004694 1.1e-46 191.8 391 45.0
Nitab4.5_0000639g0180 Nicotiana tabacum HOM05D004052 ORTHO05D004694 1.1e-46 191.8 365 50.4
HanXRQChr10g0305751 Helianthus annuus HOM05D004052 ORTHO05D004694 1.4e-46 191.4 360 41.7
Actinidia12841 Actinidia chinensis HOM05D004052 ORTHO05D004694 5.3e-46 189.5 381 50.4
Duzib268G0054 Durio zibethinus HOM05D004052 ORTHO05D004694 6.9e-46 189.1 394 50.0
Lj1A816T35 Lonicera japonica HOM05D004052 ORTHO05D004694 2.0e-45 187.6 386 49.7
Nn3g20784 Nelumbo nucifera HOM05D004052 ORTHO05D004694 2.0e-45 187.6 392 40.6
BcaB03g16595 Brassica carinata HOM05D004052 ORTHO05D004694 9.9e-45 185.3 150 75.3
PGR031G1077 Punica granatum HOM05D004052 ORTHO05D004694 1.7e-44 184.5 390 48.2
Peaxi162Scf00111g00086 Petunia axillaris HOM05D004052 ORTHO05D004694 2.2e-44 184.1 386 47.2
Ah.06g187480 Amaranthus hybridus HOM05D004052 ORTHO05D004694 6.4e-44 182.6 371 40.4
Sopen07g029990 Solanum pennellii HOM05D004052 ORTHO05D004694 1.4e-43 181.4 369 50.7
Nn4g26569 Nelumbo nucifera HOM05D004052 ORTHO05D004694 4.2e-43 179.9 394 40.6
PSO541G0468 Papaver somniferum HOM05D004052 ORTHO05D004694 5.4e-43 179.5 391 42.2
Solyc07g056650.4 Solanum lycopersicum HOM05D004052 ORTHO05D004694 5.4e-43 179.5 371 50.1
EL10Ac4g08490 Beta vulgaris HOM05D004052 ORTHO05D004694 9.3e-43 178.7 395 38.0
Ca_01645_v3 Cicer arietinum L. HOM05D004052 ORTHO05D004694 9.3e-43 178.7 372 39.8
DCAR_019621 Daucus carota HOM05D004052 ORTHO05D004694 2.1e-42 177.6 416 38.5
Psat1g001080 Pisum sativum HOM05D004052 ORTHO05D004694 7.9e-42 175.6 371 47.4
Sc03g0007700 Simmondsia chinensis HOM05D004052 ORTHO05D004694 1.0e-41 175.3 369 51.5
Oeu001302.1 Olea europaea HOM05D004052 ORTHO05D004694 1.3e-41 174.9 421 35.9
TPR.G26614 Trifolium pratense HOM05D004052 ORTHO05D004694 5.1e-41 172.9 383 48.6
TPR.G22987 Trifolium pratense HOM05D004052 ORTHO05D004694 2.5e-40 170.6 381 47.0
PSO675G8138 Papaver somniferum HOM05D004052 ORTHO05D004694 4.3e-40 169.9 394 40.1
AUR62037969 Chenopodium quinoa HOM05D004052 ORTHO05D004694 7.4e-40 169.1 395 43.5
Hund02320 Selenicereus undatus HOM05D004052 ORTHO05D004694 1.6e-39 167.9 388 45.9
PGSC0003DMG400007841 Solanum tuberosum HOM05D004052 ORTHO05D004694 2.8e-39 167.2 365 47.4
Nitab4.5_0002495g0040 Nicotiana tabacum HOM05D004052 ORTHO05D004694 1.4e-38 164.9 375 47.7
Aqoxy7G03971 Aquilegia oxysepala HOM05D004052 ORTHO05D004694 2.4e-38 164.1 391 38.1
Migut.H02078 Erythranthe guttata HOM05D004052 ORTHO05D004694 2.4e-38 164.1 358 40.5
Eucgr.E02738 Eucalyptus grandis HOM05D004052 ORTHO05D004694 2.4e-38 164.1 327 41.9
BcaB03g15049 Brassica carinata HOM05D004052 ORTHO05D004694 9.0e-38 162.2 142 72.5
Nitab4.5_0000505g0150 Nicotiana tabacum HOM05D004052 ORTHO05D004694 1.2e-37 161.8 360 47.5
MSTRG.6718 Avicennia marina HOM05D004052 ORTHO05D004694 2.6e-37 160.6 392 44.4
Ah.04g163830 Amaranthus hybridus HOM05D004052 ORTHO05D004694 5.8e-37 159.5 372 36.0
TAR627G0253 Trochodendron aralioides HOM05D004052 ORTHO05D004694 7.6e-37 159.1 315 41.6
BcaB03g15566 Brassica carinata HOM05D004052 ORTHO05D004694 2.9e-36 157.1 124 75.8
BcaB03g15581 Brassica carinata HOM05D004052 ORTHO05D004694 6.4e-36 156.0 126 74.6
Migut.M00589 Erythranthe guttata HOM05D004052 ORTHO05D004694 4.6e-34 149.8 383 43.6
BcaB03g15574 Brassica carinata HOM05D004052 ORTHO05D004694 3.9e-33 146.7 119 73.9
Sopen12g006690 Solanum pennellii HOM05D004052 ORTHO05D004694 3.3e-32 143.7 365 44.9
Solyc12g011360.2 Solanum lycopersicum HOM05D004052 ORTHO05D004694 4.3e-32 143.3 365 44.9
Oeu020015.2 Olea europaea HOM05D004052 ORTHO05D004694 1.4e-30 138.3 380 41.3
Peaxi162Scf00000g00572 Petunia axillaris HOM05D004052 ORTHO05D004694 2.6e-29 134.0 314 46.2
SGA_v2.0_scaffold130G34232 Striga asiatica HOM05D004052 ORTHO05D004694 4.5e-29 133.3 363 45.2
SGA_v2.0_scaffold4G02131 Striga asiatica HOM05D004052 ORTHO05D004694 4.5e-29 133.3 312 44.9
SGA_v2.0_scaffold73G24348 Striga asiatica HOM05D004052 ORTHO05D004694 6.5e-28 129.4 382 42.7
CDE02G2317 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 3.2e-27 127.1 366 38.8
unitig_46.g18300 Utricularia gibba HOM05D004052 ORTHO05D004694 1.6e-26 124.8 358 35.8
FAN25G3263 Fragaria x ananassa HOM05D004052 ORTHO05D004694 1.0e-25 122.1 108 64.8
BcaB03g15788 Brassica carinata HOM05D004052 ORTHO05D004694 2.3e-25 120.9 100 73.0
Oeu006133.1 Olea europaea HOM05D004052 ORTHO05D004694 6.7e-25 119.4 372 34.7
unitig_747.g21598 Utricularia gibba HOM05D004052 ORTHO05D004694 6.7e-25 119.4 349 42.7
CDE10G0657 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 1.6e-23 114.8 359 34.3
Lj8P142T42 Lonicera japonica HOM05D004052 ORTHO05D004694 2.0e-21 107.8 186 56.5
CDE10G0568 Ceratophyllum demersum HOM05D004052 ORTHO05D004694 6.5e-20 102.8 297 46.8
MD14G1047200 Malus domestica HOM05D004052 ORTHO05D004694 1.2e-18 98.6 175 41.1
Medtr8g008740 Medicago truncatula HOM05D000280 ORTHO05D000632 3.6e-18 97.1 95 58.9
HPP92_020289 Vanilla planifolia HOM05D004052 ORTHO05D004694 3.9e-17 93.6 407 31.2
Zm00001eb370640 Zea mays HOM05D004052 ORTHO05D004694 1.1e-14 85.5 441 34.2
Zm00001eb152670 Zea mays HOM05D004052 ORTHO05D004694 6.9e-14 82.8 410 32.7
Oeu009879.2 Olea europaea HOM05D004052 ORTHO05D004694 5.5e-11 73.2 198 32.8
SEGI_00111 Sequoiadendron giganteum HOM05D000666 ORTHO05D001727 3.0e-09 67.4 104 43.3
Hma1.2p1_2156F.1_g315400 Hydrangea macrophylla HOM05D000666 ORTHO05D001727 3.7e-07 60.5 196 26.5
Actinidia19713 Actinidia chinensis HOM05D000666 ORTHO05D001727 6.3e-07 59.7 107 40.2
CARHR163220 Cardamine hirsuta HOM05D000666 ORTHO05D001727 8.2e-07 59.3 216 30.1
Thhalv10016431m.g Eutrema salsugineum HOM05D000666 ORTHO05D001727 1.4e-06 58.5 218 29.8
ATR0730G143 Amborella trichopoda HOM05D004052 ORTHO05D004694 1.8e-06 58.2 418 29.7
RcHm_v2.0_Chr3g0468851 Rosa chinensis HOM05D000666 ORTHO05D001727 1.8e-06 58.2 317 29.3
HPP92_024761 Vanilla planifolia HOM05D004052 ORTHO05D004694 2.4e-06 57.8 362 26.5
Ah.01g014890 Amaranthus hybridus HOM05D000666 ORTHO05D001727 3.1e-06 57.4 315 26.7
PGR102G2478 Punica granatum HOM05D000666 ORTHO05D001727 3.1e-06 57.4 197 29.4
Actinidia03751 Actinidia chinensis HOM05D000666 ORTHO05D001727 4.1e-06 57.0 310 25.5
FAN05G1417 Fragaria x ananassa HOM05D000666 ORTHO05D001727 4.1e-06 57.0 185 31.9
MD12G1124200 Malus domestica HOM05D000666 ORTHO05D001727 4.1e-06 57.0 215 32.1
FvH4_6g15372 Fragaria vesca HOM05D000666 ORTHO05D001727 5.3e-06 56.6 185 31.9
HPP92_001038 Vanilla planifolia HOM05D000666 ORTHO05D001727 5.3e-06 56.6 92 39.1
Gorai.006G168600 Gossypium raimondii HOM05D000666 ORTHO05D001727 7.0e-06 56.2 281 27.4


User provided reference genes

Program Settings