Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 4.3e-82 308.5 233 100.0
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 1.2e-76 290.4 231 87.4
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 4.3e-74 282.0 231 87.4
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 1.6e-68 263.5 228 75.4
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 5.6e-66 255.0 231 80.1
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 3.6e-65 252.3 246 74.0
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 1.1e-64 250.8 226 71.2
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 2.4e-64 249.6 226 65.5
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 4.0e-64 248.8 228 81.6
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 4.0e-64 248.8 229 66.4
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 1.2e-63 247.3 228 69.3
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.2e-63 247.3 226 71.2
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 1.5e-63 246.9 228 72.8
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 2.6e-63 246.1 229 66.8
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 3.4e-63 245.7 229 69.4
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 4.5e-63 245.4 228 61.8
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 5.8e-63 245.0 229 69.4
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 5.8e-63 245.0 228 72.8
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 5.8e-63 245.0 228 72.8
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 7.6e-63 244.6 229 55.9
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 1.7e-62 243.4 226 67.3
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 2.2e-62 243.0 226 63.7
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.8e-62 242.3 226 77.4
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 3.8e-62 242.3 226 64.6
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 6.4e-62 241.5 246 71.1
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 6.4e-62 241.5 228 68.0
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 1.1e-61 240.7 226 67.3
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 4.2e-61 238.8 225 74.2
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 5.4e-61 238.4 226 65.5
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.6e-60 236.9 226 76.5
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 2.1e-60 236.5 229 66.8
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 2.7e-60 236.1 229 65.1
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 2.7e-60 236.1 228 72.8
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 7.9e-60 234.6 228 71.9
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 2.3e-59 233.0 226 65.5
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 2.3e-59 233.0 228 76.8
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 2.3e-59 233.0 228 68.4
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 5.1e-59 231.9 227 71.4
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 6.7e-59 231.5 228 71.9
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 1.1e-58 230.7 228 63.6
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 1.5e-58 230.3 229 67.2
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 1.5e-58 230.3 228 68.4
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 2.5e-58 229.6 228 68.4
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 3.3e-58 229.2 228 65.8
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 7.4e-58 228.0 228 68.9
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 7.4e-58 228.0 228 65.4
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 1.6e-57 226.9 226 59.3
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 1.6e-57 226.9 228 73.7
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 2.1e-57 226.5 226 68.6
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 2.1e-57 226.5 228 69.3
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 3.7e-57 225.7 228 65.8
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 6.2e-57 224.9 229 67.2
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 6.2e-57 224.9 230 70.4
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 8.1e-57 224.6 228 59.2
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 4.0e-56 222.2 233 69.5
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 4.0e-56 222.2 228 75.0
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 5.3e-56 221.9 227 64.8
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 1.2e-55 220.7 224 69.6
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 1.5e-55 220.3 224 62.9
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 2.6e-55 219.5 231 71.0
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 2.6e-55 219.5 224 65.2
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 1.3e-54 217.2 228 70.6
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 1.7e-54 216.9 222 71.2
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.7e-54 216.9 225 68.4
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 1.7e-54 216.9 228 71.1
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 1.7e-54 216.9 228 71.1
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 4.9e-54 215.3 227 63.0
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 4.9e-54 215.3 226 70.4
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 4.9e-54 215.3 224 68.3
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 1.9e-53 213.4 226 64.6
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 3.2e-53 212.6 227 65.6
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 4.2e-53 212.2 228 65.8
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 9.3e-53 211.1 228 69.3
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.2e-52 210.7 233 57.1
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 2.1e-52 209.9 228 67.5
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 2.1e-52 209.9 229 72.1
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 4.6e-52 208.8 230 75.2
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 4.6e-52 208.8 228 70.6
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 1.0e-51 207.6 228 72.4
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 1.3e-51 207.2 228 64.5
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 1.8e-51 206.8 228 67.5
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 5.1e-51 205.3 228 72.8
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 1.1e-50 204.1 230 73.5
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 1.5e-50 203.8 230 72.2
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 1.5e-50 203.8 226 71.2
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 1.9e-50 203.4 229 67.7
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 4.3e-50 202.2 228 71.5
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 5.6e-50 201.8 226 72.6
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 7.4e-50 201.4 226 73.9
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 9.6e-50 201.1 228 68.4
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 2.8e-49 199.5 227 49.8
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 1.1e-48 197.6 227 67.4
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 1.8e-48 196.8 235 64.3
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 2.4e-48 196.4 230 62.2
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 2.4e-48 196.4 232 65.5
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 2.4e-48 196.4 258 58.9
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 1.2e-47 194.1 228 72.8
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 2.6e-47 193.0 227 52.0
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 2.6e-47 193.0 228 71.1
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 7.6e-47 191.4 229 50.2
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.3e-46 190.7 225 71.1
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 1.7e-46 190.3 227 70.5
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 4.9e-46 188.7 225 70.7
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 8.4e-46 188.0 233 53.6
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.4e-45 187.2 153 63.4
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 4.2e-45 185.7 331 51.4
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 1.6e-44 183.7 228 70.6
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.5e-44 182.6 228 57.5
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.5e-44 182.6 228 58.3
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.0e-43 181.0 228 56.1
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 1.0e-43 181.0 223 45.7
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 2.3e-43 179.9 229 58.5
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 5.9e-39 165.2 227 63.9
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 7.6e-39 164.9 98 77.6
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 1.7e-38 163.7 211 65.9
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 7.2e-37 158.3 226 51.8
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 4.8e-33 145.6 188 61.7
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 2.5e-29 133.3 105 81.9
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 3.0e-27 126.3 226 48.2
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 8.8e-27 124.8 96 63.5
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 2.6e-26 123.2 62 87.1
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 1.1e-24 117.9 68 83.8
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 2.5e-21 106.7 163 38.7
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 8.0e-20 101.7 226 33.2
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 1.4e-19 100.9 149 43.6
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 8.8e-19 98.2 226 32.3
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 9.7e-18 94.7 97 47.4
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 5.9e-15 85.5 162 38.3
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 1.5e-10 70.9 40 85.0
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 3.7e-09 66.2 100 46.0
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 2.7e-07 60.1 79 43.0


User provided reference genes

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