Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 8.2e-163 577.0 296 100.0
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 3.6e-150 535.0 296 91.6
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 8.0e-150 533.9 296 91.6
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 1.3e-147 526.6 296 89.5
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 2.2e-144 515.8 296 88.5
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 1.4e-141 506.5 300 86.3
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 1.4e-141 506.5 307 84.7
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 1.4e-141 506.5 307 84.7
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 1.2e-140 503.4 304 84.2
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 2.6e-140 502.3 301 85.0
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 2.6e-140 502.3 301 85.0
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 8.3e-139 497.3 295 85.4
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 1.0e-136 490.3 296 85.1
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 4.2e-135 485.0 300 82.0
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 6.8e-133 477.6 276 87.3
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 6.8e-133 477.6 276 87.3
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 9.2e-130 467.2 276 86.2
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 1.5e-127 459.9 296 79.4
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 9.5e-127 457.2 296 79.4
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.4e-117 426.8 293 73.4
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.4e-117 426.8 293 73.4
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 2.3e-117 426.0 293 74.1
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 3.1e-117 425.6 291 74.9
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 6.8e-117 424.5 290 72.1
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 1.5e-116 423.3 290 72.1
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 2.6e-116 422.5 235 88.1
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 4.4e-116 421.8 292 72.6
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 2.9e-115 419.1 289 72.7
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 6.4e-115 417.9 264 78.8
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.9e-114 416.4 295 73.2
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 4.1e-114 415.2 291 72.5
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 7.0e-114 414.5 294 70.4
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.0e-112 410.6 300 71.0
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.3e-112 409.5 289 70.6
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 3.0e-112 409.1 302 69.9
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 5.0e-112 408.3 281 73.0
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 1.1e-111 407.1 294 70.1
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.1e-111 407.1 294 70.1
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-111 407.1 292 70.5
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 1.5e-111 406.8 296 70.6
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.5e-111 406.0 294 70.1
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 2.5e-111 406.0 292 71.6
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.3e-111 405.6 278 74.1
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 3.3e-111 405.6 292 71.2
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 5.6e-111 404.8 290 70.3
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 5.6e-111 404.8 333 63.4
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 7.3e-111 404.4 286 72.0
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 7.3e-111 404.4 300 68.7
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 7.3e-111 404.4 297 70.0
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 9.5e-111 404.1 273 72.9
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 1.2e-110 403.7 273 72.9
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.2e-110 403.7 289 70.2
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 1.6e-110 403.3 264 75.0
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.8e-110 402.5 294 69.4
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.8e-110 402.5 300 69.7
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 4.7e-110 401.7 303 69.6
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 8.1e-110 401.0 289 70.9
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 8.1e-110 401.0 293 70.0
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 1.8e-109 399.8 297 67.7
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 5.2e-109 398.3 292 70.2
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 5.2e-109 398.3 300 70.3
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 1.2e-108 397.1 314 66.6
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 9.8e-108 394.0 246 77.2
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 1.3e-107 393.7 292 67.8
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.2e-107 392.9 282 69.9
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.3e-107 391.0 316 64.9
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 1.1e-106 390.6 300 68.0
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 1.1e-106 390.6 294 66.7
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.4e-106 390.2 292 68.8
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 5.4e-106 388.3 304 67.1
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 1.6e-105 386.7 297 65.3
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 2.1e-105 386.3 267 70.4
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 2.7e-105 386.0 276 69.2
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 3.5e-105 385.6 279 68.1
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 7.8e-105 384.4 276 70.7
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.3e-104 382.9 301 68.4
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 2.3e-104 382.9 277 70.8
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.3e-104 382.9 295 67.5
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.6e-104 380.9 259 71.8
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 8.6e-104 380.9 270 69.6
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 2.5e-103 379.4 267 70.4
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 5.6e-103 378.3 278 68.7
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 5.6e-103 378.3 280 67.5
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.6e-102 376.7 302 64.6
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.1e-102 376.3 256 70.3
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 3.6e-102 375.6 276 67.0
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 6.2e-102 374.8 248 71.4
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 8.1e-102 374.4 256 72.7
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.4e-101 373.6 277 71.1
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.4e-101 373.6 277 71.1
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 5.2e-101 371.7 293 67.9
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.6e-100 369.4 276 65.9
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 3.4e-100 369.0 298 62.1
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 5.8e-100 368.2 303 65.0
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 9.9e-100 367.5 272 69.5
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 2.2e-99 366.3 280 68.2
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 2.2e-99 366.3 298 61.4
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 2.2e-99 366.3 287 66.9
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.4e-99 364.8 259 67.6
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 6.4e-99 364.8 266 68.8
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.4e-98 363.6 303 63.0
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 7.1e-98 361.3 299 63.9
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 7.8e-97 357.8 287 64.5
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 3.0e-96 355.9 302 63.9
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 6.6e-96 354.8 285 63.9
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 4.3e-95 352.1 253 71.5
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 2.1e-94 349.7 219 74.9
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 6.2e-94 348.2 251 67.3
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 1.1e-93 347.4 299 62.2
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 1.4e-90 337.0 292 57.5
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 2.4e-90 336.3 302 58.6
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 2.7e-89 332.8 256 66.0
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 2.7e-89 332.8 248 64.9
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 4.6e-89 332.0 250 66.8
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 6.2e-86 321.6 248 64.9
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 4.5e-84 315.5 252 63.1
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 3.8e-83 312.4 267 59.2
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 1.9e-82 310.1 259 59.1
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 2.1e-81 306.6 240 63.8
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 6.2e-78 295.0 294 52.4
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 1.4e-77 293.9 262 57.3
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 5.8e-76 288.5 213 70.9
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 3.2e-74 282.7 196 67.9
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.9e-73 278.1 295 48.5
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 3.0e-72 276.2 295 47.8
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 8.1e-70 268.1 183 74.3
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 4.2e-66 255.8 275 49.8
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.7e-63 245.4 176 66.5
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 1.3e-62 244.2 162 80.2
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 3.7e-62 242.7 242 53.7
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 2.0e-60 236.9 142 78.9
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 1.0e-59 234.6 142 79.6
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 8.5e-59 231.5 213 54.5
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 1.6e-57 227.3 142 73.9
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.9e-51 206.5 182 61.0
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.7e-49 199.9 240 42.9
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 3.9e-48 196.1 127 74.8
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 6.7e-48 195.3 114 81.6
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.1e-45 188.0 128 68.0
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.7e-44 181.8 238 46.6
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 1.1e-42 177.9 238 43.7
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 5.5e-42 175.6 159 66.7
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 2.9e-35 153.3 265 37.7
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 5.0e-35 152.5 192 53.1
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 1.1e-34 151.4 220 40.5
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 3.0e-32 143.3 135 63.7
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 4.0e-32 142.9 158 52.5
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 7.5e-31 138.7 84 76.2
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 4.2e-26 122.9 82 69.5
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 1.6e-25 120.9 72 81.9
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 3.4e-23 113.2 86 64.0
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 3.4e-23 113.2 184 35.9
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.1e-21 106.7 77 68.8
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 4.2e-18 96.3 62 72.6
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 1.2e-17 94.7 283 27.6
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 6.1e-17 92.4 306 26.1
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 1.0e-16 91.7 50 86.0
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 3.0e-16 90.1 285 24.9
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 4.4e-15 86.3 154 29.9
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 4.1e-13 79.7 57 77.2
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 4.1e-13 79.7 57 77.2
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 4.1e-13 79.7 158 25.9
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 9.2e-13 78.6 292 25.0
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 2.8e-09 67.0 156 29.5
Actinidia27648 Actinidia chinensis HOM05D004215 ORTHO05D052913 9.8e-07 58.5 122 33.6
COL.COLO4_26135 Corchorus olitorius HOM05D000565 ORTHO05D004389 1.7e-06 57.8 172 25.6
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 3.7e-06 56.6 167 24.6
Aa31LG7G4470 Aethionema arabicum HOM05D000565 ORTHO05D004389 4.9e-06 56.2 165 26.1
HanXRQChr16g0531381 Helianthus annuus HOM05D000565 ORTHO05D004389 4.9e-06 56.2 174 24.7
Lj4C220T3 Lonicera japonica HOM05D000565 ORTHO05D004389 6.4e-06 55.8 171 25.7
PRCOL_00003073 Prasinoderma coloniale HOM05D004215 ORTHO05D018306 6.4e-06 55.8 162 30.2
Carub.0001s1955 Capsella rubella HOM05D000565 ORTHO05D004389 8.3e-06 55.5 165 26.1
CARHR020500 Cardamine hirsuta HOM05D000565 ORTHO05D004389 8.3e-06 55.5 165 24.8
ECA246G2128 Erigeron canadensis HOM05D000565 ORTHO05D004389 8.3e-06 55.5 174 24.7
THA.LOC104811414 Tarenaya hassleriana HOM05D000565 ORTHO05D004389 8.3e-06 55.5 165 26.1
GSVIVG01009925001 Vitis vinifera HOM05D000565 ORTHO05D004389 8.3e-06 55.5 165 25.5


User provided reference genes

Program Settings