Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 8.2e-131 470.7 293 100.0
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.2e-102 377.1 291 84.9
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.2e-99 366.3 292 78.8
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 3.7e-91 339.0 291 71.8
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 6.3e-91 338.2 297 71.7
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 6.8e-85 318.2 298 61.7
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 7.8e-81 304.7 309 66.7
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 1.7e-80 303.5 311 63.0
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.3e-80 303.1 303 65.3
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.9e-80 302.4 308 64.9
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.9e-79 300.1 304 61.2
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 9.5e-79 297.7 293 60.1
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 4.7e-78 295.4 302 67.5
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 1.1e-77 294.3 286 66.1
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.5e-76 290.4 312 59.3
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 4.4e-76 288.9 288 63.9
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 5.8e-76 288.5 308 65.9
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 5.8e-76 288.5 286 66.4
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 7.5e-76 288.1 304 60.9
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.9e-75 286.2 295 56.9
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-74 283.9 305 65.9
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-73 280.8 294 63.6
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 2.1e-73 280.0 305 66.2
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 1.7e-72 276.9 339 54.3
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 5.6e-71 271.9 336 59.8
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 3.5e-57 226.1 313 52.1
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.5e-57 226.1 308 46.4
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.3e-56 224.2 292 51.4
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 2.3e-56 223.4 312 52.6
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 2.5e-55 219.9 313 45.4
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 3.3e-55 219.5 314 49.7
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 9.6e-55 218.0 312 51.6
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 2.1e-54 216.9 313 43.8
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 2.8e-54 216.5 308 55.8
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.8e-53 213.8 312 43.9
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.4e-53 213.4 312 42.9
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 2.4e-53 213.4 306 48.0
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 4.0e-53 212.6 313 49.8
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 5.3e-53 212.2 312 42.3
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 6.9e-53 211.8 307 42.3
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 9.0e-53 211.5 312 42.0
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.4e-52 209.1 312 48.7
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 5.8e-52 208.8 288 48.6
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 5.8e-52 208.8 288 48.6
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 7.6e-52 208.4 309 44.3
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 7.6e-52 208.4 306 43.1
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.3e-51 207.6 312 48.7
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 1.7e-51 207.2 313 43.5
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.9e-51 206.5 319 49.2
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 3.8e-51 206.1 317 48.9
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 3.8e-51 206.1 304 48.7
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 4.9e-51 205.7 310 43.9
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 4.9e-51 205.7 308 48.1
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 6.4e-51 205.3 304 47.0
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 8.4e-51 204.9 313 42.5
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.4e-50 204.1 304 47.4
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.4e-50 204.1 304 43.4
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 1.4e-50 204.1 309 49.5
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.9e-50 203.8 314 43.3
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 2.4e-50 203.4 304 42.8
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 3.2e-50 203.0 311 43.1
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 5.4e-50 202.2 309 41.4
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 7.1e-50 201.8 311 45.0
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 9.3e-50 201.4 310 42.3
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 9.3e-50 201.4 313 50.8
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 2.1e-49 200.3 315 47.9
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.7e-49 199.9 297 52.2
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 7.8e-49 198.4 311 41.8
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.0e-48 198.0 307 48.9
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 1.0e-48 198.0 319 48.6
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 1.3e-48 197.6 235 59.1
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 2.3e-48 196.8 290 41.4
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 3.9e-48 196.1 306 43.1
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 3.9e-48 196.1 307 51.5
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 6.6e-48 195.3 302 46.7
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 8.7e-48 194.9 288 49.0
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 1.1e-47 194.5 299 42.8
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.5e-47 194.1 306 48.0
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.5e-47 194.1 306 48.0
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 2.5e-47 193.4 311 40.8
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 5.6e-47 192.2 312 44.6
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 5.6e-47 192.2 308 43.5
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 7.3e-47 191.8 288 48.3
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 9.6e-47 191.4 304 39.8
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.6e-46 190.7 311 46.9
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 2.1e-46 190.3 313 39.9
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 6.2e-46 188.7 307 40.4
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 2.4e-45 186.8 313 44.4
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.1e-45 186.4 306 44.8
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 4.0e-45 186.0 305 41.3
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 6.9e-45 185.3 297 41.8
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 6.9e-45 185.3 306 45.1
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 1.5e-44 184.1 357 35.9
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 2.0e-44 183.7 309 46.3
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 2.0e-44 183.7 316 44.0
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 4.5e-44 182.6 264 41.7
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.3e-43 181.0 310 38.7
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 2.9e-43 179.9 304 47.0
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 3.8e-43 179.5 310 40.0
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.1e-42 177.9 308 43.2
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.4e-42 177.6 311 42.4
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 1.9e-42 177.2 306 39.2
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 4.2e-42 176.0 307 45.9
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 7.1e-42 175.3 315 38.7
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.2e-41 174.5 305 40.0
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 7.9e-41 171.8 305 39.3
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 7.9e-41 171.8 309 38.2
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 8.7e-40 168.3 309 44.7
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.5e-39 167.5 280 42.5
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.9e-39 167.2 316 46.2
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 1.3e-38 164.5 366 35.0
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 2.1e-38 163.7 304 47.0
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 2.1e-38 163.7 305 44.3
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.8e-38 163.3 306 44.8
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 2.8e-38 163.3 324 38.9
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.8e-38 162.5 306 45.1
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.1e-37 161.4 312 35.9
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 1.8e-37 160.6 365 31.5
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 4.0e-37 159.5 253 45.1
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 2.0e-36 157.1 299 36.8
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 2.0e-36 157.1 379 33.5
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 2.0e-36 157.1 302 39.1
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 5.8e-36 155.6 303 44.2
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 2.9e-35 153.3 349 32.7
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 5.5e-34 149.1 368 35.9
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.1e-31 141.4 276 37.3
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.3e-31 139.8 304 33.6
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 7.4e-31 138.7 298 36.2
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.8e-30 136.7 298 34.9
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 4.8e-30 136.0 123 57.7
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.8e-29 134.0 246 38.2
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-29 134.0 122 55.7
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 2.4e-29 133.7 203 38.9
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 9.0e-29 131.7 323 35.0
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 7.6e-28 128.6 184 44.6
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 7.9e-25 118.6 240 47.9
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 1.0e-24 118.2 170 44.7
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 1.0e-24 118.2 170 44.7
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 2.3e-24 117.1 297 31.6
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.0e-24 116.7 124 53.2
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.0e-24 116.7 124 53.2
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 3.9e-24 116.3 222 38.7
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 3.9e-24 116.3 126 50.8
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 1.9e-23 114.0 116 59.5
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 1.9e-23 114.0 116 59.5
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 9.7e-23 111.7 239 48.1
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 3.7e-22 109.8 123 49.6
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 6.3e-22 109.0 119 47.1
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.5e-20 104.4 124 46.8
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 5.9e-20 102.4 308 29.9
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 5.9e-20 102.4 111 48.6
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 5.0e-19 99.4 290 33.8
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.5e-19 98.6 321 25.2
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 1.2e-17 94.7 97 60.8
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 1.6e-17 94.4 144 41.7
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.3e-14 84.7 354 27.4
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 1.3e-14 84.7 244 43.4
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 2.8e-14 83.6 84 51.2
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 2.8e-14 83.6 293 27.3
BcaB02g06539 Brassica carinata HOM05D003707 ORTHO05D004309 1.0e-11 75.1 68 67.6
BraA09t41558Z Brassica rapa HOM05D065654 ORTHO05D032288 5.0e-11 72.8 225 33.8
A09p61960 Brassica napus HOM05D065654 ORTHO05D032288 8.5e-11 72.0 225 33.3
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.5e-11 72.0 157 34.4
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 4.2e-10 69.7 192 32.3
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 4.2e-10 69.7 256 25.8
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 7.2e-10 68.9 161 31.7
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 7.2e-10 68.9 208 30.3
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 7.2e-10 68.9 59 55.9
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 7.9e-09 65.5 86 44.2
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.8e-08 64.3 101 42.6
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 5.1e-08 62.8 113 42.5
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 6.7e-08 62.4 115 41.7
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.6e-07 60.5 92 38.0
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 3.3e-07 60.1 42 69.0
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 4.4e-07 59.7 51 58.8


User provided reference genes

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