Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.1e-36 156.0 74 100.0
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.4e-34 148.3 74 94.6
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 5.8e-33 143.7 74 91.9
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 5.8e-33 143.7 74 91.9
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 1.7e-32 142.1 74 90.5
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 2.2e-32 141.7 75 92.0
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 6.4e-32 140.2 74 89.2
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 1.4e-31 139.0 75 90.7
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 2.4e-31 138.3 74 87.8
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 4.2e-31 137.5 75 89.3
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 4.2e-31 137.5 75 89.3
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 4.2e-31 137.5 75 89.3
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 9.3e-31 136.3 74 86.5
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 1.3e-29 132.5 75 86.7
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.7e-29 132.1 74 87.8
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 2.3e-29 131.7 74 85.1
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 3.0e-29 131.3 76 82.9
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 5.1e-29 130.6 74 85.1
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 8.7e-29 129.8 74 83.8
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 8.7e-29 129.8 74 83.8
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 8.7e-29 129.8 74 83.8
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 8.7e-29 129.8 74 83.8
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 8.7e-29 129.8 74 83.8
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.5e-28 129.0 74 82.4
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.5e-28 129.0 74 83.8
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 2.5e-28 128.3 70 84.3
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.3e-27 125.9 74 81.1
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 3.6e-27 124.4 74 81.1
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 2.4e-26 121.7 70 78.6
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 4.4e-25 117.5 74 77.0
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 9.3e-23 109.8 63 74.6
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.2e-22 109.4 64 73.4
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 2.7e-22 108.2 67 70.1
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 7.8e-22 106.7 71 67.6
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 1.3e-21 105.9 68 72.1
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.3e-21 105.9 72 68.1
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.3e-21 105.9 72 68.1
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 1.7e-21 105.5 66 71.2
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 2.3e-21 105.1 70 67.1
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 3.0e-21 104.8 63 76.2
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 3.9e-21 104.4 63 69.8
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 6.6e-21 103.6 64 79.7
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.1e-20 102.8 67 71.6
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 1.5e-20 102.4 65 69.2
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 1.9e-20 102.1 58 75.9
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 1.9e-20 102.1 73 64.4
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 1.9e-20 102.1 71 69.0
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 1.9e-20 102.1 71 69.0
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 1.9e-20 102.1 71 69.0
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.5e-20 101.7 59 72.9
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.5e-20 101.7 59 72.9
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 2.5e-20 101.7 59 72.9
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 2.5e-20 101.7 63 69.8
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 3.3e-20 101.3 67 71.6
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 4.3e-20 100.9 72 66.7
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.3e-20 100.9 71 67.6
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 7.3e-20 100.1 68 69.1
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 7.3e-20 100.1 67 67.2
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 7.3e-20 100.1 60 73.3
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 9.6e-20 99.8 68 69.1
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.3e-19 99.4 61 72.1
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 1.3e-19 99.4 61 72.1
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 1.3e-19 99.4 72 63.9
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.3e-19 99.4 71 64.8
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 1.3e-19 99.4 67 65.7
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 1.3e-19 99.4 61 72.1
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.6e-19 99.0 70 64.3
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 2.1e-19 98.6 65 67.7
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.8e-19 98.2 53 81.1
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 2.8e-19 98.2 57 75.4
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 3.6e-19 97.8 57 75.4
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 3.6e-19 97.8 72 61.1
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 8.1e-19 96.7 64 70.3
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.1e-18 96.3 53 79.2
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 1.4e-18 95.9 62 67.7
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 1.4e-18 95.9 65 69.2
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 3.1e-18 94.7 64 64.1
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 5.3e-18 94.0 54 74.1
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 5.3e-18 94.0 61 68.9
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 9.0e-18 93.2 54 72.2
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 9.0e-18 93.2 57 70.2
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 9.0e-18 93.2 57 70.2
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 9.0e-18 93.2 66 62.1
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 1.2e-17 92.8 66 68.2
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 1.2e-17 92.8 56 76.8
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.5e-17 92.4 70 62.9
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 2.6e-17 91.7 71 60.6
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 2.6e-17 91.7 53 73.6
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 2.6e-17 91.7 56 75.0
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 3.4e-17 91.3 62 66.1
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 3.4e-17 91.3 59 66.1
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 4.5e-17 90.9 69 58.0
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 4.5e-17 90.9 69 58.0
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.5e-17 90.9 50 80.0
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.5e-17 90.9 62 66.1
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 7.6e-17 90.1 70 57.1
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 7.6e-17 90.1 60 70.0
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 1.3e-16 89.4 58 67.2
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 1.3e-16 89.4 63 60.3
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 1.7e-16 89.0 56 71.4
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 2.9e-16 88.2 59 69.5
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.8e-16 87.8 55 72.7
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 3.8e-16 87.8 61 62.3
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 6.4e-16 87.0 56 67.9
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 1.1e-15 86.3 47 80.9
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 1.9e-15 85.5 61 60.7
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 1.9e-15 85.5 61 60.7
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 7.1e-15 83.6 46 78.3
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 1.2e-14 82.8 62 62.9
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 1.6e-14 82.4 47 76.6
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.6e-14 80.9 67 56.7
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 1.0e-13 79.7 37 94.6
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 1.0e-13 79.7 71 52.1
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 1.0e-13 79.7 61 62.3
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 5.1e-13 77.4 58 60.3
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.3e-12 74.3 55 60.0
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 8.1e-11 70.1 58 51.7
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 6.9e-10 67.0 51 58.8
BcaB08g35768 Brassica carinata HOM05D005857 ORTHO05D007193 9.0e-10 66.6 44 77.3
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 2.0e-09 65.5 59 47.5
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 7.6e-09 63.5 50 50.0
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 2.2e-08 62.0 30 83.3
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 2.9e-08 61.6 49 49.0
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 2.5e-07 58.5 59 50.8
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 2.5e-07 58.5 59 50.8
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 4.2e-07 57.8 60 45.0
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 1.6e-06 55.8 56 46.4
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.6e-06 55.8 57 45.6
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 4.6e-06 54.3 47 48.9


User provided reference genes

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