Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 1.5e-57 228.4 111 100.0
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 6.9e-50 203.0 111 87.4
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 4.6e-46 190.3 111 80.2
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 1.8e-42 178.3 115 78.3
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 2.9e-40 171.0 115 71.3
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 1.9e-39 168.3 94 85.1
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 1.9e-39 168.3 93 86.0
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 9.4e-39 166.0 94 84.0
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 4.7e-38 163.7 89 87.6
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 1.0e-37 162.5 89 87.6
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 5.1e-37 160.2 90 85.6
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 9.7e-36 156.0 90 82.2
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 9.7e-36 156.0 90 82.2
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 9.7e-36 156.0 90 82.2
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 1.8e-34 151.8 112 71.4
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 4.2e-31 140.6 115 57.4
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 7.2e-31 139.8 94 73.4
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 3.6e-30 137.5 115 56.5
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 8.0e-30 136.3 115 58.3
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 2.3e-29 134.8 112 59.8
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 6.7e-29 133.3 114 57.9
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 6.7e-29 133.3 115 55.7
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.1e-28 132.5 114 57.9
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 1.5e-28 132.1 115 57.4
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 1.5e-28 132.1 115 56.5
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 2.0e-28 131.7 114 57.9
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 3.3e-28 131.0 114 57.9
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 4.4e-28 130.6 115 57.4
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 4.4e-28 130.6 115 57.4
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 4.4e-28 130.6 115 57.4
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 5.7e-28 130.2 115 53.0
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 9.7e-28 129.4 114 56.1
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 1.3e-27 129.0 115 53.9
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 1.7e-27 128.6 111 56.8
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 1.7e-27 128.6 112 57.1
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 2.8e-27 127.9 114 57.9
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 1.1e-26 125.9 112 53.6
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 1.4e-26 125.6 112 53.6
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 5.3e-26 123.6 115 54.8
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 1.2e-25 122.5 112 50.9
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 1.6e-25 122.1 115 52.2
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 1.6e-25 122.1 112 52.7
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 4.5e-25 120.6 112 50.0
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 4.5e-25 120.6 108 56.5
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 7.7e-25 119.8 115 49.6
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 1.7e-24 118.6 112 49.1
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 2.2e-24 118.2 115 47.8
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 2.2e-24 118.2 112 50.9
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 2.2e-24 118.2 109 53.2
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 2.2e-24 118.2 115 49.6
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 2.9e-24 117.9 115 46.1
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 3.8e-24 117.5 114 47.4
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 8.5e-24 116.3 112 50.0
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 1.5e-23 115.5 112 48.2
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 2.5e-23 114.8 112 49.1
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 2.5e-23 114.8 112 48.2
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 2.1e-22 111.7 121 45.5
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 2.1e-22 111.7 112 47.3
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 2.7e-22 111.3 112 47.3
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 3.6e-22 110.9 115 46.1
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 1.3e-19 102.4 115 44.3
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 1.8e-18 98.6 112 45.5
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 1.8e-18 98.6 115 44.3
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 1.8e-18 98.6 115 44.3
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 1.7e-16 92.0 96 46.9
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 5.0e-16 90.5 96 45.8
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 8.5e-16 89.7 95 47.4
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 5.5e-15 87.0 95 46.3
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 5.5e-15 87.0 95 47.4
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 2.7e-14 84.7 114 38.6
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 1.0e-13 82.8 96 42.7
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 5.2e-13 80.5 85 45.9
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 7.5e-12 76.6 82 47.6
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 9.8e-12 76.3 83 44.6
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 1.7e-11 75.5 90 46.7
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 4.8e-11 73.9 96 40.6
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 4.5e-09 67.4 112 33.9
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 5.0e-08 63.9 85 37.6
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 4.2e-07 60.8 103 31.1
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 4.2e-07 60.8 103 33.0
CSS0001323 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D009847 9.5e-07 59.7 102 31.4
Haze_20536 Corylus avellana HOM05D002890 ORTHO05D009847 1.2e-06 59.3 103 30.1
Haze_20537 Corylus avellana HOM05D002890 ORTHO05D009847 1.6e-06 58.9 103 30.1
C05p09820 Brassica napus HOM05D002890 ORTHO05D009847 2.8e-06 58.2 103 30.1


User provided reference genes

Program Settings