Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR013690 Cardamine hirsuta HOM05D007389 ORTHO05D009400 5.8e-206 720.7 375 100.0
AT1G13310 Arabidopsis thaliana HOM05D007389 ORTHO05D009400 1.8e-159 566.2 375 76.8
Thhalv10009351m.g Eutrema salsugineum HOM05D007389 ORTHO05D009400 5.5e-156 554.7 371 76.0
AL1G25070 Arabidopsis lyrata HOM05D007389 ORTHO05D009400 2.7e-155 552.4 376 77.1
Sp1g11820 Schrenkiella parvula HOM05D007389 ORTHO05D009400 7.5e-153 544.3 370 74.1
BolC8t49230H Brassica oleracea HOM05D007389 ORTHO05D009400 3.2e-148 528.9 370 74.3
Carub.0001s1304 Capsella rubella HOM05D007389 ORTHO05D009400 4.7e-147 525.0 372 72.6
BraA08t35158Z Brassica rapa HOM05D007389 ORTHO05D009400 1.1e-143 513.8 362 72.9
A08p32350 Brassica napus HOM05D007389 ORTHO05D009400 2.4e-143 512.7 362 73.5
C08p16080 Brassica napus HOM05D007389 ORTHO05D009400 4.5e-142 508.4 362 73.2
THA.LOC104825707 Tarenaya hassleriana HOM05D007389 ORTHO05D009400 4.4e-113 412.1 378 59.3
Aa31LG1G1460 Aethionema arabicum HOM05D007389 ORTHO05D009400 7.5e-113 411.4 363 59.5
Cfa018619 Carpinus fangiana HOM05D007389 ORTHO05D009400 2.7e-86 323.2 380 46.8
Actinidia16624 Actinidia chinensis HOM05D007389 ORTHO05D009400 2.3e-85 320.1 383 47.8
Hma1.2p1_0406F.1_g146090 Hydrangea macrophylla HOM05D007389 ORTHO05D009400 8.7e-85 318.2 374 47.6
GSVIVG01011940001 Vitis vinifera HOM05D007389 ORTHO05D009400 8.7e-85 318.2 368 47.6
CSS0047863 Camellia sinensis var. sinensis HOM05D007389 ORTHO05D009400 3.7e-83 312.8 365 47.7
Thhalv10023040m.g Eutrema salsugineum HOM05D007389 ORTHO05D009400 2.4e-82 310.1 389 47.8
Sabra10G0097900 Salix brachista HOM05D007389 ORTHO05D009400 6.9e-82 308.5 370 46.5
Thecc.02G359800 Theobroma cacao HOM05D007389 ORTHO05D009400 9.0e-82 308.1 369 45.8
COL.COLO4_07880 Corchorus olitorius HOM05D007389 ORTHO05D009400 1.5e-81 307.4 369 45.8
Rhsim09G0111300 Rhododendron simsii HOM05D007389 ORTHO05D009400 4.5e-81 305.8 381 45.4
Potri.010G128700 Populus trichocarpa HOM05D007389 ORTHO05D009400 5.8e-81 305.4 370 46.8
CsaV3_5G034040 Cucumis sativus L. HOM05D007389 ORTHO05D009400 7.6e-81 305.1 369 47.7
FvH4_4g27970 Fragaria vesca HOM05D007389 ORTHO05D009400 7.6e-81 305.1 369 46.6
RcHm_v2.0_Chr4g0435681 Rosa chinensis HOM05D007389 ORTHO05D009400 1.0e-80 304.7 371 46.9
CSS0013871 Camellia sinensis var. sinensis HOM05D007389 ORTHO05D009400 1.3e-80 304.3 348 48.3
ClCG05G022970 Citrullus lanatus HOM05D007389 ORTHO05D009400 1.3e-80 304.3 369 47.7
Ciclev10031830m.g Citrus clementina HOM05D007389 ORTHO05D009400 1.7e-80 303.9 370 46.5
TWI31G0236 Tripterygium wilfordii HOM05D007389 ORTHO05D009400 1.7e-80 303.9 369 46.9
FAN17G2097 Fragaria x ananassa HOM05D007389 ORTHO05D009400 2.9e-80 303.1 369 46.1
Gohir.D12G172800 Gossypium hirsutum HOM05D007389 ORTHO05D009400 4.9e-80 302.4 369 44.7
Cc11_g10500 Coffea canephora HOM05D007389 ORTHO05D009400 6.5e-80 302.0 369 44.4
CiPaw.15G004300 Carya illinoinensis HOM05D007389 ORTHO05D009400 1.4e-79 300.8 366 44.3
Sed0014526 Sechium edule HOM05D007389 ORTHO05D009400 1.9e-79 300.4 369 47.2
Gorai.008G185300 Gossypium raimondii HOM05D007389 ORTHO05D009400 4.2e-79 299.3 369 44.4
Lalb_Chr10g0099831 Lupinus albus HOM05D007389 ORTHO05D009400 9.3e-79 298.1 370 43.8
Gohir.A12G169500 Gossypium hirsutum HOM05D007389 ORTHO05D009400 1.6e-78 297.4 369 44.2
Prupe.1G306500 Prunus persica HOM05D007389 ORTHO05D009400 2.7e-78 296.6 369 44.7
vmacro10536 Vaccinium macrocarpon HOM05D007389 ORTHO05D009400 2.7e-78 296.6 366 45.4
TAR371G0503 Trochodendron aralioides HOM05D007389 ORTHO05D009400 1.8e-77 293.9 344 48.8
Manes.06G071400 Manihot esculenta HOM05D007389 ORTHO05D009400 5.1e-77 292.4 372 44.1
Haze_17449 Corylus avellana HOM05D004993 ORTHO05D008532 6.7e-77 292.0 358 45.8
PGR102G2947 Punica granatum HOM05D007389 ORTHO05D009400 1.3e-75 287.7 381 44.9
Nn4g23752 Nelumbo nucifera HOM05D007389 ORTHO05D009400 1.6e-75 287.3 366 44.8
Phvul.003G028200 Phaseolus vulgaris HOM05D007389 ORTHO05D009400 2.1e-75 287.0 374 43.3
Sc11g0003170 Simmondsia chinensis HOM05D007389 ORTHO05D009400 1.4e-74 284.3 377 43.0
Eucgr.B03042 Eucalyptus grandis HOM05D007389 ORTHO05D009400 4.0e-74 282.7 381 44.9
Hund25095 Selenicereus undatus HOM05D007389 ORTHO05D009400 4.0e-74 282.7 379 42.2
MELO3C012220.2 Cucumis melo HOM05D007389 ORTHO05D009400 1.5e-73 280.8 342 47.4
ATR0681G192 Amborella trichopoda HOM05D007389 ORTHO05D009400 2.6e-73 280.0 364 42.9
MD13G1045500 Malus domestica HOM05D007389 ORTHO05D009400 2.6e-73 280.0 370 42.4
Nitab4.5_0014175g0010 Nicotiana tabacum HOM05D007389 ORTHO05D009400 4.5e-73 279.3 373 41.0
BcaC06g31117 Brassica carinata HOM05D007389 ORTHO05D009400 1.7e-72 277.3 383 44.9
PGSC0003DMG400007468 Solanum tuberosum HOM05D007389 ORTHO05D009400 8.4e-72 275.0 369 42.3
Sopen04g002110 Solanum pennellii HOM05D007389 ORTHO05D009400 2.7e-70 270.0 369 41.5
SalBow8G0691 Salvia bowleyana HOM05D007389 ORTHO05D009400 3.5e-70 269.6 371 42.0
Glyma.02G098600 Glycine max HOM05D007389 ORTHO05D009400 6.1e-70 268.9 374 40.4
Nitab4.5_0000280g0020 Nicotiana tabacum HOM05D007389 ORTHO05D009400 1.3e-69 267.7 373 41.0
AUR62035272 Chenopodium quinoa HOM05D007389 ORTHO05D009400 8.7e-69 265.0 369 42.0
SEGI_35624 Sequoiadendron giganteum HOM05D007389 ORTHO05D009400 8.7e-69 265.0 368 42.9
SGA_v2.0_scaffold124G33583 Striga asiatica HOM05D007389 ORTHO05D009400 1.1e-68 264.6 369 42.8
Migut.E00312 Erythranthe guttata HOM05D007389 ORTHO05D009400 1.5e-68 264.2 369 42.5
A06p42500 Brassica napus HOM05D001825 ORTHO05D002336 2.5e-68 263.5 386 42.7
ECA234G1470 Erigeron canadensis HOM05D007389 ORTHO05D009400 2.5e-68 263.5 375 41.1
Duzib268G0586 Durio zibethinus HOM05D007389 ORTHO05D009400 1.1e-66 258.1 317 44.8
FAN22G0259 Fragaria x ananassa HOM05D007389 ORTHO05D009400 1.1e-66 258.1 329 45.0
Peaxi162Scf00086g00615 Petunia axillaris HOM05D007389 ORTHO05D009400 3.1e-66 256.5 375 39.5
Nn3g17765 Nelumbo nucifera HOM05D007389 ORTHO05D009400 6.9e-66 255.4 369 41.2
Lj2g0025946 Lotus japonicus HOM05D007389 ORTHO05D009400 1.2e-65 254.6 386 39.6
HanXRQChr16g0529211 Helianthus annuus HOM05D007389 ORTHO05D009400 3.4e-65 253.1 371 40.2
VMungo1215G1613 Vigna mungo HOM05D007389 ORTHO05D009400 1.0e-64 251.5 354 40.7
BraA06t27163Z Brassica rapa HOM05D001825 ORTHO05D002336 1.7e-64 250.8 374 42.2
Lsat_1_v5_gn_4_20121 Lactuca sativa HOM05D007389 ORTHO05D009400 8.5e-64 248.4 371 39.6
SMO361G0332 Selaginella moellendorffii HOM05D007389 ORTHO05D009400 1.4e-63 247.7 363 41.9
CDE02G3618 Ceratophyllum demersum HOM05D007389 ORTHO05D009400 5.5e-63 245.7 371 38.8
Pp3c18_11800 Physcomitrium patens HOM05D007389 ORTHO05D009400 5.5e-63 245.7 368 40.8
Dinv21123 Davidia involucrata HOM05D007389 ORTHO05D009400 7.2e-63 245.4 262 49.2
Oeu042041.1 Olea europaea HOM05D007389 ORTHO05D009400 1.6e-62 244.2 313 42.5
AagrBONN_evm.TU.Sc2ySwM_228.4489 Anthoceros agrestis HOM05D007389 ORTHO05D009400 3.0e-61 240.0 368 39.7
Mapoly0108s0021 Marchantia polymorpha HOM05D007389 ORTHO05D009400 5.1e-61 239.2 371 37.5
Cpa.g.sc1.212 Carica papaya HOM05D007389 ORTHO05D009400 6.7e-61 238.8 254 49.2
QL01p044805 Quercus lobata HOM05D007389 ORTHO05D009400 5.7e-60 235.7 254 48.4
CDE08G0863 Ceratophyllum demersum HOM05D007389 ORTHO05D009400 3.1e-58 229.9 371 38.0
PSO063G2802 Papaver somniferum HOM05D007389 ORTHO05D009400 7.7e-57 225.3 374 41.7
Lj3A1018T64 Lonicera japonica HOM05D007389 ORTHO05D009400 1.0e-56 224.9 355 39.7
unitig_27.g25245 Utricularia gibba HOM05D007389 ORTHO05D009400 2.9e-56 223.4 368 39.4
Pp3c15_5000 Physcomitrium patens HOM05D007389 ORTHO05D009400 6.5e-56 222.2 394 36.3
EL10Ac6g14465 Beta vulgaris HOM05D007389 ORTHO05D009400 4.8e-51 206.1 479 31.3
BcaC06g33956 Brassica carinata HOM05D007389 ORTHO05D009400 2.2e-48 197.2 380 37.9
HPP92_023813 Vanilla planifolia HOM05D007389 ORTHO05D009400 5.0e-48 196.1 365 36.2
Actinidia14859 Actinidia chinensis HOM05D007389 ORTHO05D009400 1.1e-47 194.9 238 46.2
BolC7t44001H Brassica oleracea HOM05D001825 ORTHO05D002336 1.2e-46 191.4 338 39.6
AagrBONN_evm.TU.Sc2ySwM_362.2055 Anthoceros agrestis HOM05D007389 ORTHO05D009400 1.5e-44 184.5 252 43.3
HanXRQChr17g0567921 Helianthus annuus HOM05D007389 ORTHO05D009400 4.8e-43 179.5 256 39.5
C07p34700 Brassica napus HOM05D001825 ORTHO05D002336 9.1e-42 175.3 304 39.5
AUR62002912 Chenopodium quinoa HOM05D007389 ORTHO05D009400 1.7e-40 171.0 364 33.2
CBR_g39725 Chara braunii HOM05D001740 ORTHO05D001468 9.4e-31 138.7 244 35.7
Duzib251G0237 Durio zibethinus HOM05D007389 ORTHO05D009400 5.0e-24 116.3 143 42.0
PSO782G3111 Papaver somniferum HOM05D007389 ORTHO05D009400 1.5e-20 104.8 170 40.0
QL01p044810 Quercus lobata HOM05D007389 ORTHO05D009400 4.9e-19 99.8 116 48.3
SalBow8G3546 Salvia bowleyana HOM05D004993 ORTHO05D008532 4.9e-19 99.8 214 31.3
Lalb_Chr04g0254881 Lupinus albus HOM05D007389 ORTHO05D009400 7.8e-17 92.4 116 39.7
FAN12G3113 Fragaria x ananassa HOM05D007389 ORTHO05D009400 2.9e-16 90.5 122 41.8
TAR629G0747 Trochodendron aralioides HOM05D007389 ORTHO05D009400 4.3e-15 86.7 152 36.8
MCO11G211 Micromonas commoda HOM05D007389 ORTHO05D009400 1.0e-13 82.0 208 27.4
Nitab4.5_0000280g0130 Nicotiana tabacum HOM05D007389 ORTHO05D009400 3.1e-13 80.5 155 31.6
TAR573G0003 Trochodendron aralioides HOM05D007389 ORTHO05D009400 2.2e-11 74.3 113 37.2
SalBow8G3870 Salvia bowleyana HOM05D007389 ORTHO05D009400 1.2e-09 68.6 100 40.0


User provided reference genes

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