Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 3.3e-236 821.6 512 100.0
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 5.2e-197 691.4 521 82.0
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.2e-193 680.2 510 82.2
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 6.8e-189 664.5 516 78.3
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 8.3e-187 657.5 512 81.1
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 1.5e-183 646.7 491 81.9
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 3.6e-182 642.1 527 77.4
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 1.4e-181 640.2 528 79.4
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 2.3e-176 622.9 529 77.9
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 5.0e-176 621.7 529 77.7
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 2.5e-175 619.4 519 71.3
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 2.2e-171 606.3 518 75.3
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 4.0e-165 585.5 508 72.0
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.5e-156 557.0 533 66.4
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.0e-148 530.0 638 55.6
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 6.6e-144 515.0 516 63.8
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 5.1e-136 488.8 527 58.4
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 6.2e-134 481.9 499 64.9
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 9.9e-132 474.6 531 59.1
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 2.9e-131 473.0 535 57.4
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 4.2e-130 469.2 512 54.7
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 7.9e-129 464.9 527 57.9
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 3.9e-128 462.6 533 56.7
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 5.1e-128 462.2 551 56.1
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 6.7e-128 461.8 534 58.1
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 1.1e-127 461.1 533 56.5
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 1.1e-127 461.1 555 55.5
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 1.5e-127 460.7 529 57.7
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 1.9e-127 460.3 550 57.6
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 4.8e-126 455.7 556 54.1
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.4e-125 454.1 548 55.1
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 3.1e-125 453.0 525 60.2
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 4.0e-125 452.6 559 53.3
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 5.3e-125 452.2 557 59.6
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 6.9e-125 451.8 537 55.7
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 9.9e-124 448.0 530 55.5
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 9.9e-124 448.0 523 54.5
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 2.9e-123 446.4 556 49.8
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 6.4e-123 445.3 563 51.3
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 8.4e-123 444.9 514 56.4
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.4e-122 444.1 525 57.5
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.4e-122 444.1 526 58.7
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 1.6e-121 440.7 525 59.6
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.1e-121 440.3 522 52.5
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 3.5e-121 439.5 585 51.1
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 3.5e-121 439.5 517 56.9
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 4.6e-121 439.1 515 56.7
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.8e-120 437.2 540 59.8
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 1.8e-120 437.2 523 50.3
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 1.8e-120 437.2 540 58.3
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 3.0e-120 436.4 538 52.8
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.5e-119 433.3 532 56.0
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 2.5e-119 433.3 521 50.9
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 1.3e-118 431.0 545 53.4
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 8.1e-118 428.3 542 51.3
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 1.8e-117 427.2 540 58.0
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 2.4e-117 426.8 503 51.9
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 4.0e-117 426.0 538 55.4
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 4.0e-117 426.0 525 50.9
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 9.0e-117 424.9 518 57.3
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 9.0e-117 424.9 526 56.7
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 2.0e-116 423.7 514 50.4
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.4e-116 422.9 537 52.0
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 4.5e-116 422.5 481 51.6
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 1.0e-115 421.4 511 51.3
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.0e-115 421.4 531 58.0
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 2.9e-115 419.9 526 54.4
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 2.9e-115 419.9 546 52.9
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.8e-115 419.5 537 52.7
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 4.9e-115 419.1 544 51.3
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 9.3e-114 414.8 526 54.2
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 1.6e-113 414.1 514 56.0
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.1e-113 413.7 549 47.9
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 2.7e-113 413.3 535 51.8
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 2.7e-113 413.3 495 54.5
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 3.5e-113 412.9 522 51.1
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 6.0e-113 412.1 525 52.0
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 1.8e-112 410.6 525 52.8
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 1.8e-112 410.6 548 54.2
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 3.9e-112 409.5 537 52.0
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 5.1e-112 409.1 528 54.0
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 5.1e-112 409.1 532 57.5
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 8.7e-112 408.3 540 54.3
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 1.9e-111 407.1 545 53.6
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 5.7e-111 405.6 502 55.0
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 9.6e-111 404.8 539 57.0
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 9.6e-111 404.8 521 56.4
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.1e-110 403.7 523 51.1
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 6.3e-110 402.1 552 48.9
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 1.4e-109 401.0 538 50.7
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 3.1e-109 399.8 513 49.3
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 4.1e-109 399.4 537 51.8
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.0e-108 397.1 521 53.7
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 1.0e-107 394.8 547 50.3
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.3e-107 394.4 528 54.5
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 2.2e-107 393.7 504 58.5
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 1.4e-106 391.0 531 48.0
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 1.4e-106 391.0 518 53.1
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 9.3e-106 388.3 504 54.6
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 3.3e-103 379.8 483 56.7
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 2.8e-102 376.7 494 55.9
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 9.1e-101 371.7 487 51.1
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 9.1e-101 371.7 540 47.0
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 2.2e-99 367.1 410 61.0
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 3.9e-96 356.3 544 46.9
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 4.5e-92 342.8 517 45.5
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 2.2e-91 340.5 546 48.0
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 2.2e-91 340.5 546 48.0
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 1.4e-88 331.3 440 50.7
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.8e-88 330.9 528 48.5
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 4.8e-86 322.8 400 56.5
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 6.3e-86 322.4 547 41.0
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 5.2e-80 302.8 466 54.7
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 2.0e-76 290.8 463 47.9
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 4.5e-76 289.7 608 41.6
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 9.5e-66 255.4 559 35.8
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 1.2e-63 248.4 536 42.9
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 2.6e-63 247.3 463 47.3
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 2.2e-62 244.2 510 37.5
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 9.2e-61 238.8 510 37.1
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 3.5e-60 236.9 566 34.6
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 4.5e-60 236.5 510 36.5
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 7.5e-55 219.2 177 64.4
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 3.7e-54 216.9 487 36.6
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 2.3e-51 207.6 553 39.2
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 4.3e-50 203.4 223 48.9
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 2.6e-47 194.1 355 53.2
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 7.5e-47 192.6 162 63.6
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 6.4e-46 189.5 246 47.2
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 3.0e-43 180.6 200 51.0
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 1.6e-41 174.9 383 45.4
Actinidia01371 Actinidia chinensis HOM05D002413 ORTHO05D002638 6.8e-40 169.5 160 60.0
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 4.4e-39 166.8 222 43.7
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 6.0e-36 156.4 247 42.1
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 3.6e-33 147.1 208 36.5
HPP92_027088 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.0e-32 143.7 382 33.5
Zm00001eb279220 Zea mays HOM05D003551 ORTHO05D004869 1.2e-28 132.1 137 55.5
HPP92_027649 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.6e-26 122.5 329 33.1
HPP92_028576 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.1e-25 119.4 308 33.4
HPP92_006539 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.2e-21 107.1 127 50.4
HPP92_026938 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.3e-18 96.3 334 32.3
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 1.3e-17 95.5 148 40.5
arahy.Tifrunner.gnm1.ann1.LJ7GP5 Arachis hypogaea HOM05D003551 ORTHO05D004869 2.8e-17 94.4 102 54.9
HPP92_006576 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.4e-13 82.0 104 49.0
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.9e-13 81.6 278 34.2
HPP92_027653 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.1e-13 79.7 287 30.0
HPP92_006538 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.9e-12 76.3 80 53.8
HPP92_028550 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.1e-11 73.6 104 44.2
HPP92_027994 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.9e-10 71.6 155 35.5
BcaB08g34419 Brassica carinata HOM05D003551 ORTHO05D004869 2.5e-10 71.2 46 80.4
HPP92_027083 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.5e-10 71.2 152 38.8
HPP92_006855 Vanilla planifolia HOM05D003551 ORTHO05D004869 9.6e-10 69.3 245 29.0
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 2.1e-09 68.2 61 65.6
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 6.2e-09 66.6 51 70.6
HPP92_026598 Vanilla planifolia HOM05D003551 ORTHO05D004869 8.1e-09 66.2 80 47.5
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 1.1e-08 65.9 59 61.0
HPP92_028371 Vanilla planifolia HOM05D003551 ORTHO05D004869 5.3e-08 63.5 76 48.7
HPP92_006544 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.5e-07 62.0 96 42.7
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 2.6e-07 61.2 56 64.3
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 5.8e-07 60.1 43 69.8
HPP92_028492 Vanilla planifolia HOM05D003551 ORTHO05D004869 7.6e-07 59.7 121 37.2
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 6.4e-06 56.6 93 39.8
arahy.Tifrunner.gnm1.ann1.C8ML0J Arachis hypogaea HOM05D003551 ORTHO05D004869 8.4e-06 56.2 55 52.7


User provided reference genes

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