Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 5.8e-220 767.3 402 100.0
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.4e-197 692.2 404 91.3
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 3.8e-195 684.9 407 89.2
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 6.9e-189 664.1 408 86.5
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 7.9e-185 650.6 403 84.9
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.3e-182 643.3 404 85.1
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 4.4e-167 591.7 413 81.4
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 7.5e-167 590.9 413 81.1
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.2e-166 589.3 424 77.8
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 4.8e-166 588.2 405 80.0
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 4.5e-164 581.6 405 79.5
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 2.9e-163 578.9 415 79.5
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 5.0e-155 551.6 430 71.9
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 3.2e-154 548.9 418 73.0
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 4.7e-153 545.0 412 74.0
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 5.7e-151 538.1 362 75.4
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 9.8e-151 537.3 362 75.1
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.2e-150 536.2 414 72.0
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 4.9e-150 535.0 414 73.9
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 3.1e-149 532.3 415 72.3
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 9.2e-149 530.8 362 74.6
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.2e-148 530.4 435 69.2
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 2.0e-148 529.6 362 74.3
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 2.0e-148 529.6 362 74.3
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 2.5e-146 522.7 432 67.4
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 4.3e-146 521.9 379 73.9
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.2e-145 520.4 372 72.6
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 1.5e-143 513.5 430 66.0
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.8e-141 506.5 411 71.3
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 4.6e-140 501.9 429 66.7
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 1.7e-139 500.0 435 64.1
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 1.0e-136 490.7 434 65.4
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 6.8e-136 488.0 439 64.2
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 8.9e-136 487.6 400 66.0
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 1.5e-135 486.9 394 66.8
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 2.6e-135 486.1 434 64.7
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 9.8e-135 484.2 405 64.9
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 3.7e-134 482.3 389 65.0
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 8.3e-134 481.1 402 64.7
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 3.2e-133 479.2 432 64.8
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 7.0e-133 478.0 405 64.2
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.2e-132 477.2 385 66.5
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 1.2e-132 477.2 385 64.4
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 2.0e-132 476.5 433 63.7
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 6.0e-132 474.9 432 64.4
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.3e-131 473.8 429 63.2
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.3e-131 473.8 405 64.4
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.3e-131 473.8 427 62.3
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.3e-131 473.8 425 64.2
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.7e-131 473.4 378 65.3
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.7e-131 473.4 379 64.9
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.7e-131 473.4 378 65.3
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 2.3e-131 473.0 437 65.0
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.0e-131 471.9 432 63.9
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 6.6e-131 471.5 433 61.9
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 6.6e-131 471.5 401 64.8
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.1e-130 470.7 431 62.4
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 1.1e-130 470.7 430 61.4
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 1.1e-130 470.7 426 59.9
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 2.5e-130 469.5 425 59.5
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 4.3e-130 468.8 434 63.1
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 9.5e-130 467.6 386 62.4
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.2e-129 467.2 437 58.4
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 1.2e-129 467.2 432 61.6
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.6e-129 466.8 387 63.0
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 3.6e-129 465.7 388 63.9
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 6.2e-129 464.9 426 62.0
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 6.2e-129 464.9 434 61.5
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 8.1e-129 464.5 430 61.4
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.1e-128 464.2 430 60.5
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 2.3e-128 463.0 431 61.5
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.3e-128 463.0 431 61.5
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.3e-128 463.0 431 61.5
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 4.0e-128 462.2 430 59.8
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.5e-127 460.3 431 61.9
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 1.5e-127 460.3 433 60.3
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 1.5e-127 460.3 433 59.8
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 2.0e-127 459.9 382 61.8
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 3.4e-127 459.1 432 60.9
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.4e-127 459.1 433 60.0
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 9.8e-127 457.6 387 63.6
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 1.3e-126 457.2 429 61.1
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.3e-126 457.2 432 60.4
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.2e-126 456.4 387 61.5
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 3.7e-126 455.7 387 61.8
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 1.9e-125 453.4 429 58.0
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.1e-125 452.2 431 60.6
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 5.4e-125 451.8 428 61.9
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.2e-124 450.7 432 60.2
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 2.1e-124 449.9 399 60.9
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 3.5e-124 449.1 403 60.5
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.3e-123 447.2 430 59.3
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.7e-123 446.8 402 59.2
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 3.0e-123 446.0 423 59.8
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 8.6e-123 444.5 436 56.9
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 2.5e-122 443.0 418 61.0
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 2.0e-119 433.3 457 58.4
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 6.4e-118 428.3 443 58.0
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 6.4e-118 428.3 377 60.7
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.1e-117 427.6 374 60.4
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 9.2e-117 424.5 360 61.7
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 2.1e-116 423.3 437 58.4
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.1e-116 423.3 439 58.5
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.7e-116 422.9 461 57.0
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 4.6e-116 422.2 359 61.6
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 1.0e-115 421.0 435 57.2
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 4.3e-114 415.6 388 60.1
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.9e-112 407.9 375 56.3
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.0e-111 406.8 358 60.1
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.6e-111 406.4 407 59.7
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 3.4e-111 406.0 375 56.0
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 7.6e-111 404.8 374 55.9
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.9e-109 400.2 362 58.3
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 3.5e-108 396.0 414 57.7
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 4.0e-104 382.5 287 67.6
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 8.4e-102 374.8 462 49.8
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.8e-99 367.1 393 52.7
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 4.3e-98 362.5 371 52.6
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 5.3e-96 355.5 322 60.2
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 5.3e-96 355.5 392 48.5
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 2.6e-95 353.2 373 50.9
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.8e-78 296.2 293 56.0
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 5.9e-71 272.3 427 41.5
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 4.8e-65 252.7 386 39.1
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 1.1e-64 251.5 242 56.2
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.9e-64 248.8 291 48.8
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 3.7e-57 226.5 208 52.9
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 8.2e-57 225.3 208 57.2
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 1.0e-54 218.4 180 65.6
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 7.2e-53 212.2 162 64.8
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.7e-52 209.5 190 67.4
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 6.1e-52 209.1 217 53.9
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 8.0e-52 208.8 160 67.5
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.3e-46 191.4 146 68.5
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 2.7e-44 183.7 292 36.0
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.8e-43 181.0 206 51.5
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 1.3e-41 174.9 363 33.1
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.8e-28 130.6 65 92.3
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.8e-19 101.3 111 55.0
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.9e-17 93.2 75 56.0
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 8.1e-12 75.9 311 26.7
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 2.9e-09 67.4 36 80.6
C08p14660 Brassica napus HOM05D023945 ORTHO05D042485 1.7e-06 58.2 47 59.6
BolC5t29789H Brassica oleracea HOM05D005312 ORTHO05D006459 2.3e-06 57.8 32 75.0


User provided reference genes

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