Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.3e-65 251.5 122 100.0
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 1.1e-36 156.8 120 64.2
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 7.3e-33 144.1 120 60.0
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 1.5e-30 136.3 120 57.5
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-30 136.3 120 57.5
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 2.0e-30 136.0 120 56.7
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-30 136.0 120 56.7
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 2.0e-30 136.0 120 56.7
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 2.0e-30 136.0 120 56.7
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 2.9e-29 132.1 120 56.7
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 4.9e-29 131.3 120 55.0
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 4.9e-29 131.3 120 55.0
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 9.3e-28 127.1 121 55.4
AT1G12660 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 3.9e-26 121.7 122 53.3
BolC8t52263H Brassica oleracea HOM05D007482 ORTHO05D003038 1.1e-25 120.2 109 55.0
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 3.3e-25 118.6 119 47.9
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 5.6e-25 117.9 119 48.7
AL1G24120 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 5.3e-23 111.3 117 53.0
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-21 106.7 120 46.7
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 1.3e-21 106.7 120 46.7
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.3e-21 106.7 102 53.9
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 2.2e-21 105.9 100 54.0
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 3.8e-21 105.1 100 54.0
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 4.9e-21 104.8 100 54.0
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 1.9e-20 102.8 101 52.5
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 1.2e-19 100.1 120 45.0
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 1.2e-19 100.1 120 45.0
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.5e-19 98.6 103 51.5
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 7.3e-17 90.9 131 42.0
Thhalv10017433m.g Eutrema salsugineum HOM05D007482 ORTHO05D016827 1.1e-15 87.0 124 44.4
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.8e-15 86.3 124 40.3
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 4.0e-15 85.1 120 40.8
Carub.0002s1663 Capsella rubella HOM05D007482 ORTHO05D003038 5.3e-15 84.7 123 39.0
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 2.6e-14 82.4 120 40.0
CARHR035990 Cardamine hirsuta HOM05D007482 ORTHO05D003038 2.6e-14 82.4 124 40.3
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 2.6e-14 82.4 118 37.3
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 5.8e-14 81.3 115 33.0
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 1.3e-13 80.1 120 35.8
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 1.7e-13 79.7 134 38.8
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 2.2e-13 79.3 118 38.1
BcaC05g25168 Brassica carinata HOM05D007482 ORTHO05D003038 6.4e-13 77.8 100 41.0
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 8.4e-13 77.4 120 35.8
A09p35330 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-12 76.6 131 35.1
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 1.4e-12 76.6 134 35.1
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.4e-12 76.6 114 36.8
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 1.9e-12 76.3 134 35.1
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 1.9e-12 76.3 119 34.5
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 3.2e-12 75.5 118 38.1
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 4.2e-12 75.1 131 35.9
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 4.2e-12 75.1 122 38.5
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 4.2e-12 75.1 108 35.2
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.6e-11 73.2 123 35.8
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.6e-11 73.2 118 37.3
BraA09t39063Z Brassica rapa HOM05D007482 ORTHO05D003038 2.1e-11 72.8 131 34.4
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 2.1e-11 72.8 139 35.3
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 2.1e-11 72.8 117 37.6
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 2.1e-11 72.8 119 33.6
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 2.7e-11 72.4 117 33.3
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 3.5e-11 72.0 120 31.7
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 6.0e-11 71.2 132 32.6
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 6.0e-11 71.2 132 32.6
Thhalv10019821m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 7.9e-11 70.9 122 35.2
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 7.9e-11 70.9 118 34.7
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 7.9e-11 70.9 119 31.9
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 7.9e-11 70.9 117 35.9
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 1.0e-10 70.5 119 34.5
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 1.0e-10 70.5 119 34.5
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 1.0e-10 70.5 119 32.8
MD09G1214600 Malus domestica HOM05D005672 ORTHO05D003038 1.0e-10 70.5 116 31.9
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 1.3e-10 70.1 120 34.2
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 2.3e-10 69.3 119 33.6
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 2.3e-10 69.3 119 32.8
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.0e-10 68.9 118 36.4
Thhalv10019701m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.0e-10 68.9 102 40.2
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 3.0e-10 68.9 117 33.3
A07p23290 Brassica napus HOM05D017967 ORTHO05D003038 3.9e-10 68.6 124 33.9
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 3.9e-10 68.6 120 32.5
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 3.9e-10 68.6 118 33.9
Sp1g11260 Schrenkiella parvula HOM05D007482 ORTHO05D003038 3.9e-10 68.6 127 33.9
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 5.1e-10 68.2 129 33.3
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.1e-09 67.0 117 34.2
A05p29160 Brassica napus HOM05D007482 ORTHO05D003038 1.1e-09 67.0 111 36.0
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 1.1e-09 67.0 132 34.1
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.1e-09 67.0 114 34.2
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 1.1e-09 67.0 125 34.4
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.5e-09 66.6 125 34.4
Carub.0001s1238 Capsella rubella HOM05D007482 ORTHO05D003038 1.9e-09 66.2 130 35.4
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 2.5e-09 65.9 119 31.1
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 4.3e-09 65.1 131 32.1
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 4.3e-09 65.1 125 33.6
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 5.6e-09 64.7 123 31.7
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 7.4e-09 64.3 114 34.2
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 7.4e-09 64.3 117 32.5
C05p44570 Brassica napus HOM05D007482 ORTHO05D003038 9.6e-09 63.9 118 34.7
BolC5t33184H Brassica oleracea HOM05D007482 ORTHO05D003038 9.6e-09 63.9 118 34.7
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-08 63.5 135 31.1
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 2.1e-08 62.8 119 31.9
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 2.8e-08 62.4 108 31.5
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.7e-08 62.0 117 29.9
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 6.2e-08 61.2 119 30.3
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.4e-07 60.1 119 33.6
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 2.4e-07 59.3 131 26.7
Thhalv10009133m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 2.4e-07 59.3 118 31.4
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 2.4e-07 59.3 124 32.3
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 3.1e-07 58.9 90 30.0
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 3.1e-07 58.9 124 32.3
AT1G12672 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 5.3e-07 58.2 114 36.0
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 6.9e-07 57.8 128 32.8
CARHR182820 Cardamine hirsuta HOM05D007482 ORTHO05D003038 6.9e-07 57.8 89 36.0
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 6.9e-07 57.8 114 28.9
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 1.5e-06 56.6 118 31.4
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 1.5e-06 56.6 118 31.4
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 1.5e-06 56.6 118 31.4
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.0e-06 56.2 94 35.1
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.6e-06 55.8 112 33.9
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 4.5e-06 55.1 88 34.1
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 7.6e-06 54.3 116 28.4
Carub.0001s3826 Capsella rubella HOM05D007540 ORTHO05D009531 1.0e-05 53.9 128 30.5


User provided reference genes

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