Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 9.2e-164 580.5 366 100.0
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 5.8e-126 454.9 368 84.0
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 9.6e-121 437.6 368 83.2
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 1.4e-119 433.7 347 85.0
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 2.6e-118 429.5 367 80.7
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 8.4e-109 397.9 365 77.5
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 8.4e-109 397.9 365 77.5
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 2.5e-108 396.4 365 77.8
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 2.7e-107 392.9 360 78.3
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 4.1e-103 379.0 367 77.4
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 6.5e-101 371.7 368 73.4
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 2.7e-70 270.0 283 55.5
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 5.4e-55 219.2 226 55.3
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 5.4e-31 139.4 176 47.7
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 4.3e-28 129.8 163 44.2
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 1.2e-27 128.3 143 50.3
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 6.2e-27 125.9 180 42.2
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 3.1e-26 123.6 205 37.1
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 6.8e-26 122.5 157 46.5
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 6.8e-26 122.5 176 41.5
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 1.2e-25 121.7 167 44.3
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 4.4e-25 119.8 220 39.5
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 1.7e-24 117.9 209 39.2
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 2.2e-24 117.5 234 37.6
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 2.9e-24 117.1 169 43.8
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 4.9e-24 116.3 152 47.4
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 4.9e-24 116.3 181 42.0
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 8.4e-24 115.5 153 43.8
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 1.9e-23 114.4 144 47.9
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 4.1e-23 113.2 153 39.9
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 7.1e-23 112.5 171 40.4
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 7.1e-23 112.5 184 35.9
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 9.2e-23 112.1 211 36.0
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 2.7e-22 110.5 213 37.1
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 4.6e-22 109.8 136 48.5
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 4.6e-22 109.8 158 42.4
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 7.8e-22 109.0 141 46.8
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 7.8e-22 109.0 141 46.8
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 7.8e-22 109.0 182 41.2
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 1.0e-21 108.6 177 40.7
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 1.0e-21 108.6 141 41.8
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 1.7e-21 107.8 216 36.6
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 2.3e-21 107.5 214 37.4
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 8.6e-21 105.5 135 45.9
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 8.6e-21 105.5 167 38.9
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 8.6e-21 105.5 179 41.9
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 1.5e-20 104.8 192 38.0
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 1.5e-20 104.8 182 37.4
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 1.9e-20 104.4 133 46.6
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 1.9e-20 104.4 133 46.6
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 4.3e-20 103.2 174 36.2
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 9.6e-20 102.1 178 38.8
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 1.2e-19 101.7 176 35.2
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 6.2e-19 99.4 143 44.1
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 6.2e-19 99.4 164 37.8
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 1.4e-18 98.2 182 38.5
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 1.8e-18 97.8 162 37.0
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 1.8e-18 97.8 156 39.1
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 2.4e-18 97.4 210 38.1
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 3.1e-18 97.1 174 37.4
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 3.1e-18 97.1 137 40.9
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 6.9e-18 95.9 194 34.5
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 6.9e-18 95.9 192 39.1
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 1.7e-16 91.3 166 37.3
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 2.9e-16 90.5 215 34.0
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 6.4e-16 89.4 182 35.7
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 6.4e-16 89.4 182 35.7
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 8.4e-16 89.0 109 49.5
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 1.4e-15 88.2 194 36.1
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 1.9e-15 87.8 141 41.8
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 2.4e-15 87.4 172 36.0
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 4.2e-15 86.7 141 39.7
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 7.1e-15 85.9 161 35.4
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 9.3e-15 85.5 188 33.5
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 1.6e-14 84.7 207 32.4
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 7.8e-14 82.4 155 31.6
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 1.0e-13 82.0 161 35.4
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 1.7e-13 81.3 132 40.9
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 8.1e-11 72.4 260 25.0
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 1.1e-10 72.0 144 37.5
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 1.8e-10 71.2 221 29.0
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 1.8e-10 71.2 240 26.7
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 2.4e-10 70.9 133 35.3
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 2.4e-10 70.9 209 20.6
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 2.4e-10 70.9 134 37.3
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 4.0e-10 70.1 130 34.6
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 5.3e-10 69.7 126 34.1
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 5.3e-10 69.7 126 34.1
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 2.0e-09 67.8 133 32.3
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 2.6e-09 67.4 149 33.6
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 4.5e-09 66.6 133 31.6
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 7.6e-09 65.9 81 46.9
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 9.9e-09 65.5 99 39.4
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 9.9e-09 65.5 228 24.1
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 1.7e-08 64.7 201 30.8
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 2.2e-08 64.3 160 31.2
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 2.2e-08 64.3 231 23.8
Aa31LG11G14510 Aethionema arabicum HOM05D000424 ORTHO05D000355 4.9e-08 63.2 202 19.8
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 4.9e-08 63.2 132 30.3
PSO732G0288 Papaver somniferum HOM05D008994 ORTHO05D010954 6.4e-08 62.8 97 34.0
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 6.4e-08 62.8 233 23.6
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 8.4e-08 62.4 185 27.0
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 1.1e-07 62.0 218 23.4
PSO170G2530 Papaver somniferum HOM05D008994 ORTHO05D010954 1.4e-07 61.6 83 33.7
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 1.4e-07 61.6 167 28.7
BcaC01g01383 Brassica carinata HOM05D002453 ORTHO05D008746 2.4e-07 60.8 184 26.6
C03p91440 Brassica napus HOM05D002453 ORTHO05D008746 2.4e-07 60.8 184 26.6
BolC3t21463H Brassica oleracea HOM05D002753 ORTHO05D003097 2.4e-07 60.8 184 26.6
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 2.4e-07 60.8 181 28.7
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 2.4e-07 60.8 150 28.0
MELO3C023572.2 Cucumis melo HOM05D001779 ORTHO05D001753 3.2e-07 60.5 110 36.4
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 4.2e-07 60.1 251 23.5
CsaV3_7G030850 Cucumis sativus L. HOM05D001779 ORTHO05D001753 9.3e-07 58.9 110 35.5
AagrBONN_evm.TU.Sc2ySwM_117.4017 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-06 58.5 235 20.4
SEGI_11609 Sequoiadendron giganteum HOM05D008234 ORTHO05D010422 1.6e-06 58.2 106 31.1
Lj6g0010510 Lotus japonicus HOM05D000001 ORTHO05D000003 2.7e-06 57.4 213 25.4
MBI19_g17402_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D002854 2.7e-06 57.4 249 24.5
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 3.5e-06 57.0 139 28.1
A03p39640 Brassica napus HOM05D006749 ORTHO05D008352 4.6e-06 56.6 103 28.2
BraA03t13111Z Brassica rapa HOM05D006749 ORTHO05D008352 4.6e-06 56.6 103 28.2
SalBow2G3072 Salvia bowleyana HOM05D006749 ORTHO05D008352 4.6e-06 56.6 119 24.4
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 4.6e-06 56.6 140 23.6
Thecc.02G112900 Theobroma cacao HOM05D003056 ORTHO05D003422 4.6e-06 56.6 100 29.0
Sed0000805 Sechium edule HOM05D003056 ORTHO05D003422 6.0e-06 56.2 156 19.9
Sed0001001 Sechium edule HOM05D001779 ORTHO05D001753 6.0e-06 56.2 110 34.5
vmacro18646 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 6.0e-06 56.2 240 21.2
Atru.chr5.2421 Acer truncatum HOM05D003056 ORTHO05D003422 7.9e-06 55.8 183 20.2
BolC8t50474H Brassica oleracea HOM05D000001 ORTHO05D000003 7.9e-06 55.8 107 28.0
ClCG02G006650 Citrullus lanatus HOM05D003056 ORTHO05D003422 7.9e-06 55.8 169 20.7
MD14G1065400 Malus domestica HOM05D007281 ORTHO05D009241 7.9e-06 55.8 57 50.9
SalBow2G2076 Salvia bowleyana HOM05D003056 ORTHO05D003422 7.9e-06 55.8 165 23.0
Zm00001eb246390 Zea mays HOM05D000424 ORTHO05D008586 7.9e-06 55.8 86 37.2
Zm00001eb298940 Zea mays HOM05D001779 ORTHO05D001753 7.9e-06 55.8 101 27.7


User provided reference genes

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