Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.2e-172 609.8 308 100.0
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 1.9e-154 549.3 311 87.5
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 4.2e-154 548.1 311 85.9
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 7.2e-154 547.4 311 86.2
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.5e-151 539.7 311 85.9
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 9.8e-151 537.0 311 84.6
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 1.3e-150 536.6 309 85.1
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 2.0e-148 529.3 308 85.7
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 3.5e-148 528.5 311 83.3
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 3.5e-148 528.5 311 83.3
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 3.5e-148 528.5 311 83.3
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 4.5e-148 528.1 309 83.5
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 1.0e-147 526.9 311 83.3
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 1.7e-139 499.6 304 80.9
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 5.0e-139 498.0 304 81.6
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 8.6e-139 497.3 304 80.6
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 8.6e-139 497.3 304 78.9
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 4.3e-138 495.0 304 80.3
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 5.6e-138 494.6 306 78.4
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 5.6e-138 494.6 304 78.9
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 9.5e-138 493.8 304 80.3
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 9.5e-138 493.8 304 78.6
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 1.2e-137 493.4 304 79.9
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.2e-137 493.4 304 81.2
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.1e-137 492.7 306 77.8
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 2.1e-137 492.7 304 81.9
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.1e-137 492.7 304 79.3
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 2.1e-137 492.7 304 81.9
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 2.8e-137 492.3 306 77.5
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 2.8e-137 492.3 304 77.6
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 3.6e-137 491.9 304 79.6
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 4.7e-137 491.5 306 78.1
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 4.7e-137 491.5 304 80.6
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 8.0e-137 490.7 304 80.9
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.1e-136 490.3 304 79.9
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 1.4e-136 490.0 304 77.6
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.4e-136 490.0 304 79.9
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 1.4e-136 490.0 304 78.0
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 1.4e-136 490.0 304 80.6
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 2.3e-136 489.2 304 80.3
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 2.3e-136 489.2 309 77.0
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 3.1e-136 488.8 308 80.2
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 3.1e-136 488.8 304 78.9
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 6.8e-136 487.6 304 79.9
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 6.8e-136 487.6 304 78.6
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 6.8e-136 487.6 309 78.0
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 8.9e-136 487.3 304 80.3
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 8.9e-136 487.3 304 79.3
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 1.2e-135 486.9 304 78.6
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 1.5e-135 486.5 304 77.0
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 2.6e-135 485.7 306 77.5
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 2.6e-135 485.7 304 76.6
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 2.6e-135 485.7 304 78.3
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 2.6e-135 485.7 304 78.3
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 4.4e-135 485.0 304 80.3
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 5.8e-135 484.6 304 79.3
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 5.8e-135 484.6 304 79.6
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 5.8e-135 484.6 309 79.9
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 5.8e-135 484.6 304 78.9
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 7.5e-135 484.2 304 77.6
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 7.5e-135 484.2 304 78.6
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.3e-134 483.4 304 79.3
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 1.3e-134 483.4 304 79.9
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 1.3e-134 483.4 304 79.3
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.7e-134 483.0 304 79.3
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 2.9e-134 482.3 304 78.9
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 3.7e-134 481.9 306 76.5
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 3.7e-134 481.9 304 77.3
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 6.4e-134 481.1 304 76.3
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 6.4e-134 481.1 304 76.3
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 6.4e-134 481.1 304 78.9
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 6.4e-134 481.1 304 78.0
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 8.3e-134 480.7 304 76.3
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.1e-133 480.3 304 76.6
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.1e-133 480.3 304 77.0
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 1.4e-133 479.9 304 77.6
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.4e-133 479.9 304 77.0
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.9e-133 479.6 304 77.0
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 2.4e-133 479.2 325 75.4
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 4.1e-133 478.4 309 75.7
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.1e-133 478.4 309 75.7
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 4.1e-133 478.4 304 76.3
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 7.0e-133 477.6 304 76.6
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 7.0e-133 477.6 309 75.7
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.6e-132 476.5 308 78.6
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 2.7e-132 475.7 305 76.4
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.5e-132 475.3 304 76.0
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 4.6e-132 474.9 304 78.9
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 7.8e-132 474.2 304 78.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 1.7e-131 473.0 304 76.0
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.9e-131 471.9 306 75.5
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 3.9e-131 471.9 304 74.3
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 6.6e-131 471.1 304 75.0
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 8.6e-131 470.7 304 76.3
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 3.3e-130 468.8 304 76.6
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.8e-129 465.7 304 76.3
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 2.8e-129 465.7 304 75.0
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 6.2e-129 464.5 334 70.1
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 1.5e-127 459.9 304 71.4
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 3.4e-127 458.8 307 74.6
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 8.3e-126 454.1 371 64.4
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.4e-125 453.4 309 74.8
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 3.2e-125 452.2 309 75.1
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 7.8e-124 447.6 304 73.7
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 1.5e-122 443.4 304 73.0
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 4.7e-121 438.3 304 71.4
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 4.7e-121 438.3 304 71.4
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 6.8e-120 434.5 396 60.4
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 8.9e-120 434.1 304 70.4
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 2.0e-119 433.0 304 70.7
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 1.4e-112 410.2 304 66.1
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.4e-111 405.6 304 63.8
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 6.0e-108 394.8 306 63.1
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.0e-107 392.5 304 62.2
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 6.9e-104 381.3 310 61.0
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 8.4e-102 374.4 260 75.0
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.1e-101 374.0 239 79.5
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 1.6e-100 370.2 304 65.5
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 1.1e-98 364.0 306 60.1
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 2.2e-94 349.7 309 57.3
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.0e-86 324.3 224 74.6
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.7e-86 323.6 229 74.7
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 6.5e-86 321.6 225 70.7
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 2.1e-76 290.0 207 68.1
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 3.8e-70 269.2 186 73.1
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 2.5e-69 266.5 159 82.4
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.8e-67 260.4 149 83.9
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 2.2e-62 243.4 143 81.8
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 1.5e-58 230.7 185 64.3
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 7.2e-53 211.8 152 65.1
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 5.3e-48 195.7 305 42.3
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 1.0e-46 191.4 127 75.6
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 9.1e-40 168.3 80 93.8
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 4.5e-39 166.0 89 86.5
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 1.7e-38 164.1 83 88.0
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 6.6e-38 162.2 80 91.2
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 2.5e-37 160.2 79 91.1
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 5.5e-37 159.1 132 56.1
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 3.6e-36 156.4 312 35.9
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 2.0e-34 150.6 307 34.2
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.2e-31 141.4 205 42.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 2.5e-29 133.7 79 79.7
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 3.1e-27 126.7 82 70.7
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 3.9e-22 109.8 58 84.5
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 3.3e-21 106.7 64 76.6
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 2.3e-19 100.5 297 31.6
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 6.8e-19 99.0 55 78.2
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.4e-11 74.7 245 25.7
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 4.0e-11 73.2 74 62.2


User provided reference genes

Program Settings