Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 2.0e-50 202.2 106 100.0
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 2.9e-46 188.3 106 91.5
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 2.5e-45 185.3 106 90.6
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 3.2e-45 184.9 106 90.6
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 4.7e-44 181.0 106 86.8
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.0e-43 179.9 107 87.9
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 4.4e-42 174.5 106 86.8
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 2.8e-41 171.8 106 84.0
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 4.9e-41 171.0 106 84.0
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 4.9e-41 171.0 106 84.0
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 9.2e-40 166.8 106 84.0
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 6.6e-38 160.6 106 83.0
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.1e-37 159.8 106 76.4
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 3.3e-37 158.3 116 75.0
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 5.6e-37 157.5 106 79.2
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 1.2e-36 156.4 99 83.8
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 1.8e-35 152.5 109 78.0
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 3.4e-34 148.3 106 74.5
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 5.7e-34 147.5 108 75.9
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.3e-33 146.4 108 75.9
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 1.1e-32 143.3 133 63.9
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 1.1e-32 143.3 106 74.5
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 2.7e-31 138.7 80 91.2
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 3.5e-31 138.3 80 88.8
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 3.5e-31 138.3 109 71.6
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 4.6e-31 137.9 128 64.1
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.2e-26 123.2 101 66.3
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 1.2e-26 123.2 93 67.7
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.5e-26 122.9 101 66.3
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.5e-26 122.9 101 66.3
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 2.6e-26 122.1 101 64.4
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 5.8e-26 120.9 97 68.0
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 6.4e-25 117.5 92 66.3
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 6.4e-25 117.5 104 62.5
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 7.0e-24 114.0 102 61.8
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 1.6e-23 112.8 92 63.0
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 3.5e-23 111.7 93 65.6
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 4.6e-23 111.3 106 59.4
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 1.0e-22 110.2 101 59.4
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.3e-22 109.8 102 55.9
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 2.3e-22 109.0 103 57.3
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 5.0e-22 107.8 100 59.0
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 6.6e-22 107.5 99 57.6
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 8.6e-22 107.1 106 55.7
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 1.1e-21 106.7 95 63.2
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 1.9e-21 105.9 98 60.2
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 2.5e-21 105.5 102 57.8
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 7.3e-21 104.0 98 62.2
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 7.3e-21 104.0 97 55.7
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 7.3e-21 104.0 93 61.3
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 7.3e-21 104.0 94 56.4
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 9.5e-21 103.6 94 56.4
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 2.1e-20 102.4 80 68.8
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 2.8e-20 102.1 92 62.0
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 2.8e-20 102.1 98 54.1
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 3.6e-20 101.7 102 57.8
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 4.7e-20 101.3 106 55.7
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 6.2e-20 100.9 111 51.4
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 8.1e-20 100.5 97 53.6
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 8.1e-20 100.5 97 53.6
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 1.1e-19 100.1 102 55.9
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 1.4e-19 99.8 101 54.5
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 1.4e-19 99.8 101 57.4
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 4.0e-19 98.2 106 54.7
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 5.2e-19 97.8 95 57.9
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 5.2e-19 97.8 94 58.5
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 8.9e-19 97.1 95 53.7
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.2e-18 96.7 93 59.1
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.5e-18 96.3 95 55.8
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 2.0e-18 95.9 92 57.6
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.4e-18 94.7 81 58.0
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 4.4e-18 94.7 92 55.4
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.8e-18 94.4 106 50.9
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 5.8e-18 94.4 96 56.2
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 7.5e-18 94.0 88 60.2
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 7.5e-18 94.0 106 48.1
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 7.5e-18 94.0 95 55.8
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 1.3e-17 93.2 107 54.2
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 1.3e-17 93.2 103 51.5
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 2.9e-17 92.0 94 52.1
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 3.7e-17 91.7 98 52.0
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 3.7e-17 91.7 101 52.5
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 3.7e-17 91.7 104 49.0
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 3.7e-17 91.7 97 50.5
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 3.7e-17 91.7 97 51.5
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 4.9e-17 91.3 96 53.1
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 6.4e-17 90.9 97 50.5
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 8.3e-17 90.5 83 57.8
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 1.4e-16 89.7 57 80.7
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 2.4e-16 89.0 91 54.9
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 3.2e-16 88.6 91 53.8
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 3.2e-16 88.6 94 52.1
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 3.2e-16 88.6 106 50.0
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 4.1e-16 88.2 96 54.2
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 5.4e-16 87.8 90 51.1
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 7.1e-16 87.4 91 51.6
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 9.2e-16 87.0 88 51.1
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 9.2e-16 87.0 80 57.5
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 2.1e-15 85.9 83 56.6
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.7e-15 85.5 82 56.1
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 2.7e-15 85.5 76 60.5
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 2.7e-15 85.5 93 51.6
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 3.5e-15 85.1 76 56.6
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 6.0e-15 84.3 93 51.6
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 6.0e-15 84.3 87 54.0
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.3e-14 83.2 85 49.4
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 1.7e-14 82.8 72 59.7
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 1.7e-14 82.8 65 61.5
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.3e-14 82.4 76 53.9
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 3.9e-14 81.6 80 58.8
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 3.9e-14 81.6 91 50.5
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 5.1e-14 81.3 91 51.6
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 5.1e-14 81.3 93 49.5
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 6.6e-14 80.9 60 68.3
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 6.6e-14 80.9 60 66.7
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 8.6e-14 80.5 107 47.7
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 8.6e-14 80.5 93 50.5
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 8.6e-14 80.5 73 57.5
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 1.1e-13 80.1 70 61.4
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 1.1e-13 80.1 105 47.6
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.5e-13 79.7 94 50.0
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 1.5e-13 79.7 92 50.0
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.5e-13 79.0 97 49.5
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 2.5e-13 79.0 95 49.5
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 2.5e-13 79.0 95 49.5
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 4.3e-13 78.2 94 47.9
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 4.3e-13 78.2 76 55.3
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 5.6e-13 77.8 95 48.4
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 5.6e-13 77.8 93 48.4
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 7.3e-13 77.4 93 50.5
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.2e-12 76.6 74 55.4
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.6e-12 76.3 102 51.0
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 2.1e-12 75.9 62 59.7
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 2.1e-12 75.9 59 61.0
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 4.7e-12 74.7 82 48.8
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 6.2e-12 74.3 67 52.2
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 1.1e-11 73.6 91 41.8
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 5.2e-11 71.2 53 64.2
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 6.8e-11 70.9 88 50.0
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 1.5e-10 69.7 70 57.1
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 1.5e-10 69.7 63 50.8
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 3.4e-10 68.6 92 45.7
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.8e-10 67.8 60 53.3
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 5.8e-10 67.8 92 44.6
Actinidia01613 Actinidia chinensis HOM05D000487 ORTHO05D000405 7.6e-10 67.4 79 48.1
Cc02_g23340 Coffea canephora HOM05D004289 ORTHO05D005141 1.3e-09 66.6 107 43.0
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 1.3e-09 66.6 103 43.7
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 3.8e-09 65.1 86 44.2
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 3.8e-09 65.1 103 42.7
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 4.9e-09 64.7 78 51.3
Sopen01g045750 Solanum pennellii HOM05D004289 ORTHO05D005141 2.4e-08 62.4 102 42.2
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 9.2e-08 60.5 96 41.7
DCAR_001703 Daucus carota HOM05D004289 ORTHO05D005141 1.6e-07 59.7 107 42.1
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 3.5e-07 58.5 97 39.2
Lalb_Chr15g0090801 Lupinus albus HOM05D004289 ORTHO05D005141 3.5e-07 58.5 96 40.6
CiPaw.09G185500 Carya illinoinensis HOM05D004061 ORTHO05D004693 2.3e-06 55.8 71 47.9
Ciclev10012656m.g Citrus clementina HOM05D004061 ORTHO05D004693 8.6e-06 53.9 68 47.1
Peaxi162Scf00011g00155 Petunia axillaris HOM05D004289 ORTHO05D005141 8.6e-06 53.9 106 36.8


User provided reference genes

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