Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR009070 Cardamine hirsuta HOM05D000248 ORTHO05D000146 1.7e-47 192.2 90 100.0
CARHR009080 Cardamine hirsuta HOM05D000248 ORTHO05D000146 6.2e-29 130.6 81 80.2
Thhalv10008383m.g Eutrema salsugineum HOM05D000248 ORTHO05D000146 1.8e-20 102.4 75 69.3
AL1G19600 Arabidopsis lyrata HOM05D000248 ORTHO05D000146 8.9e-20 100.1 78 66.7
AT1G09155 Arabidopsis thaliana HOM05D000248 ORTHO05D000146 1.5e-19 99.4 77 67.5
C05p07150 Brassica napus HOM05D000248 ORTHO05D000146 2.2e-18 95.5 77 64.9
Sp1g07740 Schrenkiella parvula HOM05D000248 ORTHO05D000146 1.9e-17 92.4 76 65.8
BraA06t23802Z Brassica rapa HOM05D000248 ORTHO05D000146 3.2e-17 91.7 75 61.3
C05p07160 Brassica napus HOM05D000248 ORTHO05D000146 4.6e-16 87.8 72 59.7
Carub.0001s0846 Capsella rubella HOM05D000248 ORTHO05D000146 4.6e-16 87.8 77 62.3
BcaC05g24769 Brassica carinata HOM05D000248 ORTHO05D000146 7.8e-16 87.0 70 62.9
BolC5t29470H Brassica oleracea HOM05D000248 ORTHO05D000146 7.8e-16 87.0 70 62.9
BcaB01g03905 Brassica carinata HOM05D000248 ORTHO05D000146 3.9e-15 84.7 77 54.5
CARHR289790 Cardamine hirsuta HOM05D000248 ORTHO05D000146 1.1e-14 83.2 79 55.7
BcaB04g20155 Brassica carinata HOM05D000248 ORTHO05D000146 3.3e-14 81.6 80 57.5
AT1G56250 Arabidopsis thaliana HOM05D000248 ORTHO05D000146 5.6e-14 80.9 78 57.7
Sp2g06670 Schrenkiella parvula HOM05D000248 ORTHO05D000146 5.6e-14 80.9 80 56.2
BcaC05g24770 Brassica carinata HOM05D000248 ORTHO05D000146 7.3e-14 80.5 71 57.7
BcaC09g49572 Brassica carinata HOM05D000248 ORTHO05D000146 9.6e-14 80.1 81 56.8
C01p35100 Brassica napus HOM05D000248 ORTHO05D000146 9.6e-14 80.1 81 56.8
BolC1t03471H Brassica oleracea HOM05D000248 ORTHO05D000146 9.6e-14 80.1 81 56.8
BolC8t48887H Brassica oleracea HOM05D000248 ORTHO05D000146 2.1e-13 79.0 77 55.8
Aa31LG2G11610 Aethionema arabicum HOM05D000248 ORTHO05D000146 3.6e-13 78.2 80 57.5
BcaC07g38473 Brassica carinata HOM05D000248 ORTHO05D000146 3.6e-13 78.2 77 55.8
A01p27310 Brassica napus HOM05D000248 ORTHO05D000146 3.6e-13 78.2 81 55.6
A08p34790 Brassica napus HOM05D000248 ORTHO05D000146 3.6e-13 78.2 75 57.3
C08p12490 Brassica napus HOM05D000248 ORTHO05D000146 3.6e-13 78.2 77 55.8
BraA01t02867Z Brassica rapa HOM05D000248 ORTHO05D000146 3.6e-13 78.2 81 55.6
BraA08t35390Z Brassica rapa HOM05D000248 ORTHO05D000146 3.6e-13 78.2 75 57.3
Carub.0002s0792 Capsella rubella HOM05D000248 ORTHO05D000146 3.6e-13 78.2 78 56.4
AL1G65870 Arabidopsis lyrata HOM05D000248 ORTHO05D000146 1.8e-12 75.9 76 56.6
AT1G56240 Arabidopsis thaliana HOM05D000248 ORTHO05D000146 2.4e-12 75.5 76 55.3
Carub.0002s0791 Capsella rubella HOM05D000248 ORTHO05D000146 2.4e-12 75.5 80 52.5
CARHR289800 Cardamine hirsuta HOM05D000248 ORTHO05D000146 2.4e-12 75.5 77 53.2
THA.LOC104805903 Tarenaya hassleriana HOM05D000248 ORTHO05D000146 4.0e-12 74.7 76 53.9
TPR.G1604 Trifolium pratense HOM05D000248 ORTHO05D000146 1.7e-10 69.3 74 44.6
Medtr7g112550 Medicago truncatula HOM05D000248 ORTHO05D000146 3.8e-10 68.2 73 45.2
Psat3g011880 Pisum sativum HOM05D000248 ORTHO05D000146 1.4e-09 66.2 73 45.2
Ciclev10013351m.g Citrus clementina HOM05D000248 ORTHO05D000146 4.2e-09 64.7 75 50.7
THA.LOC104805902 Tarenaya hassleriana HOM05D000248 ORTHO05D000146 5.4e-09 64.3 78 47.4
Lalb_Chr15g0077491 Lupinus albus HOM05D000248 ORTHO05D000146 9.3e-09 63.5 75 45.3
Lalb_Chr15g0077511 Lupinus albus HOM05D000248 ORTHO05D000146 1.2e-08 63.2 86 41.9
CiPaw.08G159200 Carya illinoinensis HOM05D000248 ORTHO05D000146 1.6e-08 62.8 59 52.5
A06p05930 Brassica napus HOM05D001413 ORTHO05D001385 2.7e-08 62.0 44 63.6
Medtr1g083580 Medicago truncatula HOM05D000248 ORTHO05D000146 2.7e-08 62.0 75 49.3
Actinidia19771 Actinidia chinensis HOM05D000248 ORTHO05D000146 3.5e-08 61.6 56 55.4
Glyma.03G233800 Glycine max HOM05D000248 ORTHO05D000146 3.5e-08 61.6 76 44.7
Glyma.19G231000 Glycine max HOM05D000248 ORTHO05D000146 3.5e-08 61.6 52 55.8
Ca_09333_v3 Cicer arietinum L. HOM05D000248 ORTHO05D000146 4.6e-08 61.2 73 43.8
Psat6g151440 Pisum sativum HOM05D000248 ORTHO05D000146 6.0e-08 60.8 53 58.5
Lj5g0016574 Lotus japonicus HOM05D000248 ORTHO05D000146 1.3e-07 59.7 51 58.8
Lj5g0024884 Lotus japonicus HOM05D000248 ORTHO05D000146 1.3e-07 59.7 51 58.8
Manes.08G114900 Manihot esculenta HOM05D000248 ORTHO05D000146 1.3e-07 59.7 74 45.9
Potri.013G012600 Populus trichocarpa HOM05D000248 ORTHO05D000146 1.3e-07 59.7 74 48.6
Lj1g0002451 Lotus japonicus HOM05D000248 ORTHO05D000146 2.3e-07 58.9 58 51.7
Gohir.A11G270100 Gossypium hirsutum HOM05D000248 ORTHO05D000146 3.9e-07 58.2 75 45.3
Thecc.05G316500 Theobroma cacao HOM05D000248 ORTHO05D000146 3.9e-07 58.2 75 45.3
Haze_04110 Corylus avellana HOM05D000248 ORTHO05D000146 6.6e-07 57.4 54 53.7
ECA236G2239 Erigeron canadensis HOM05D000248 ORTHO05D000146 6.6e-07 57.4 73 41.1
Gohir.D11G280200 Gossypium hirsutum HOM05D000248 ORTHO05D000146 6.6e-07 57.4 75 45.3
Cpa.g.sc48.119 Carica papaya HOM05D000248 ORTHO05D000146 8.7e-07 57.0 52 57.7
Eucgr.H03260 Eucalyptus grandis HOM05D000248 ORTHO05D000146 8.7e-07 57.0 67 49.3
Glyma.10G150400 Glycine max HOM05D000248 ORTHO05D000146 8.7e-07 57.0 51 54.9
Gorai.007G302400 Gossypium raimondii HOM05D000248 ORTHO05D000146 8.7e-07 57.0 75 45.3
VMungo0720G1023 Vigna mungo HOM05D000248 ORTHO05D000146 8.7e-07 57.0 65 47.7
Cfa006659 Carpinus fangiana HOM05D000248 ORTHO05D000146 1.1e-06 56.6 55 50.9
Duzib177G0977 Durio zibethinus HOM05D000248 ORTHO05D000146 1.1e-06 56.6 75 45.3
Lsat_1_v5_gn_7_74040 Lactuca sativa HOM05D000248 ORTHO05D000146 1.5e-06 56.2 66 45.5
Sabra13G0011300 Salix brachista HOM05D000248 ORTHO05D000146 1.5e-06 56.2 74 45.9
ECA236G0781 Erigeron canadensis HOM05D000248 ORTHO05D000146 1.9e-06 55.8 73 38.4
QL03p019168 Quercus lobata HOM05D000248 ORTHO05D000146 1.9e-06 55.8 74 45.9
Atru.chr12.2052 Acer truncatum HOM05D000248 ORTHO05D000146 2.5e-06 55.5 60 50.0
CAN.G1273.32 Capsicum annuum HOM05D000248 ORTHO05D000146 3.3e-06 55.1 54 51.9
AUR62000663 Chenopodium quinoa HOM05D000248 ORTHO05D000146 3.3e-06 55.1 52 48.1
AUR62005288 Chenopodium quinoa HOM05D000248 ORTHO05D000146 3.3e-06 55.1 51 49.0
Eucgr.B01904 Eucalyptus grandis HOM05D000248 ORTHO05D000146 4.3e-06 54.7 74 40.5
HanXRQChr11g0339141 Helianthus annuus HOM05D000248 ORTHO05D000146 4.3e-06 54.7 73 42.5
GSVIVG01031160001 Vitis vinifera HOM05D000248 ORTHO05D000146 4.3e-06 54.7 67 47.8
arahy.Tifrunner.gnm1.ann1.CIN5QE Arachis hypogaea HOM05D000248 ORTHO05D000146 5.6e-06 54.3 63 52.4
AUR62000664 Chenopodium quinoa HOM05D000248 ORTHO05D000146 5.6e-06 54.3 52 48.1
Duzib106G1323 Durio zibethinus HOM05D000248 ORTHO05D000146 5.6e-06 54.3 75 45.3
arahy.Tifrunner.gnm1.ann1.693WQ9 Arachis hypogaea HOM05D000248 ORTHO05D000146 7.3e-06 53.9 63 50.8
CSS0015978 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 7.3e-06 53.9 54 53.7
CSS0018779 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 7.3e-06 53.9 54 53.7
Lsat_1_v5_gn_7_74080 Lactuca sativa HOM05D000248 ORTHO05D000146 7.3e-06 53.9 63 44.4
Potri.005G022000 Populus trichocarpa HOM05D000248 ORTHO05D000146 7.3e-06 53.9 74 44.6
Hund07156 Selenicereus undatus HOM05D000248 ORTHO05D000146 7.3e-06 53.9 55 49.1
PGSC0003DMG400024771 Solanum tuberosum HOM05D000248 ORTHO05D000146 7.3e-06 53.9 49 53.1
Duzib106G0428 Durio zibethinus HOM05D000248 ORTHO05D000146 9.6e-06 53.5 50 58.0
Medtr1g026510 Medicago truncatula HOM05D000248 ORTHO05D000146 9.6e-06 53.5 58 48.3


User provided reference genes

Program Settings