Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR008260 Cardamine hirsuta HOM05D007233 ORTHO05D009043 2.1e-76 288.9 140 100.0
A06p05410 Brassica napus HOM05D007233 ORTHO05D009043 6.0e-63 244.2 140 88.6
BraA06t23750Z Brassica rapa HOM05D007233 ORTHO05D009043 6.0e-63 244.2 140 88.6
BcaB07g34087 Brassica carinata HOM05D007233 ORTHO05D009043 6.6e-62 240.7 140 86.4
C05p06530 Brassica napus HOM05D007233 ORTHO05D009043 6.6e-62 240.7 140 86.4
BolC5t29413H Brassica oleracea HOM05D007233 ORTHO05D009043 6.6e-62 240.7 140 86.4
Carub.0001s0774 Capsella rubella HOM05D007233 ORTHO05D009043 6.6e-62 240.7 140 85.7
Sp1g07040 Schrenkiella parvula HOM05D007233 ORTHO05D009043 8.6e-62 240.4 140 85.7
AL1G18800 Arabidopsis lyrata HOM05D007233 ORTHO05D009043 1.1e-61 240.0 140 87.1
THA.LOC104826400 Tarenaya hassleriana HOM05D007233 ORTHO05D009043 1.2e-60 236.5 140 82.9
Aa31LG1G6480 Aethionema arabicum HOM05D007233 ORTHO05D009043 2.8e-60 235.3 140 80.7
Thhalv10009077m.g Eutrema salsugineum HOM05D007233 ORTHO05D009043 3.6e-60 235.0 140 86.4
AT1G08390 Arabidopsis thaliana HOM05D007233 ORTHO05D009043 6.8e-59 230.7 140 81.4
Potri.004G190200 Populus trichocarpa HOM05D007233 ORTHO05D009043 7.6e-50 200.7 138 68.8
Thecc.09G294400 Theobroma cacao HOM05D007233 ORTHO05D009043 1.7e-49 199.5 138 66.7
Sabra04G0127900 Salix brachista HOM05D007233 ORTHO05D009043 2.4e-48 195.7 138 65.9
Lj3g0012043 Lotus japonicus HOM05D007233 ORTHO05D009043 3.2e-48 195.3 140 65.0
COL.COLO4_31139 Corchorus olitorius HOM05D007233 ORTHO05D009043 4.1e-48 194.9 140 65.0
Ca_10766_v3 Cicer arietinum L. HOM05D007233 ORTHO05D009043 2.1e-47 192.6 138 65.2
Gohir.D13G228300 Gossypium hirsutum HOM05D007233 ORTHO05D009043 3.5e-47 191.8 138 65.2
Lalb_Chr03g0027851 Lupinus albus HOM05D007233 ORTHO05D009043 1.7e-46 189.5 140 65.0
SalBow3G1176 Salvia bowleyana HOM05D007233 ORTHO05D009043 1.7e-46 189.5 138 63.8
Manes.04G010800 Manihot esculenta HOM05D007233 ORTHO05D009043 5.1e-46 188.0 138 63.0
GSVIVG01031420001 Vitis vinifera HOM05D007233 ORTHO05D009043 1.1e-45 186.8 137 65.7
MSTRG.17742 Avicennia marina HOM05D007233 ORTHO05D009043 2.5e-45 185.7 138 64.5
CSS0019792 Camellia sinensis var. sinensis HOM05D007233 ORTHO05D009043 5.6e-45 184.5 137 63.5
VMungo1127G1048 Vigna mungo HOM05D007233 ORTHO05D009043 5.6e-45 184.5 140 62.1
Phvul.011G088600 Phaseolus vulgaris HOM05D007233 ORTHO05D009043 9.6e-45 183.7 140 62.9
Rhsim13G0103700 Rhododendron simsii HOM05D007233 ORTHO05D009043 1.2e-44 183.3 133 66.9
TAR369G0714 Trochodendron aralioides HOM05D007233 ORTHO05D009043 1.2e-44 183.3 138 63.0
PGR119G2223 Punica granatum HOM05D007233 ORTHO05D009043 4.7e-44 181.4 136 65.4
Sed0016181 Sechium edule HOM05D007233 ORTHO05D009043 1.1e-43 180.3 140 60.7
Gohir.A13G223500 Gossypium hirsutum HOM05D007233 ORTHO05D009043 2.4e-43 179.1 138 63.8
vmacro03232 Vaccinium macrocarpon HOM05D007233 ORTHO05D009043 2.4e-43 179.1 133 66.9
Migut.N02527 Erythranthe guttata HOM05D007233 ORTHO05D009043 5.2e-43 177.9 138 61.6
ClCG01G013980 Citrullus lanatus HOM05D007233 ORTHO05D009043 6.9e-43 177.6 140 62.1
Medtr4g056300 Medicago truncatula HOM05D007233 ORTHO05D009043 6.9e-43 177.6 139 62.6
TPR.G32017 Trifolium pratense HOM05D007233 ORTHO05D009043 2.0e-42 176.0 139 61.2
unitig_699.g19183 Utricularia gibba HOM05D007233 ORTHO05D009043 2.0e-42 176.0 136 59.6
Duzib170G0414 Durio zibethinus HOM05D007233 ORTHO05D009043 2.6e-42 175.6 138 62.3
FvH4_3g30010 Fragaria vesca HOM05D007233 ORTHO05D009043 4.4e-42 174.9 137 59.9
Lsat_1_v5_gn_1_61521 Lactuca sativa HOM05D007233 ORTHO05D009043 1.3e-41 173.3 139 60.4
Ciclev10030019m.g Citrus clementina HOM05D007233 ORTHO05D009043 1.7e-41 172.9 139 60.4
Glyma.11G190700 Glycine max HOM05D007233 ORTHO05D009043 2.2e-41 172.6 148 58.8
SHI05395 Sapria himalayana HOM05D007233 ORTHO05D009043 2.9e-41 172.2 138 62.3
Haze_23494 Corylus avellana HOM05D007233 ORTHO05D009043 3.8e-41 171.8 138 60.9
EL10Ac9g21047 Beta vulgaris HOM05D007233 ORTHO05D009043 4.9e-41 171.4 139 58.3
CiPaw.14G104900 Carya illinoinensis HOM05D007233 ORTHO05D009043 4.9e-41 171.4 141 61.0
FAN25G1956 Fragaria x ananassa HOM05D007233 ORTHO05D009043 1.1e-40 170.2 137 58.4
FAN21G0394 Fragaria x ananassa HOM05D007233 ORTHO05D009043 1.4e-40 169.9 137 58.4
SGA_v2.0_scaffold93G28323 Striga asiatica HOM05D007233 ORTHO05D009043 1.9e-40 169.5 142 57.0
Cc01_g10010 Coffea canephora HOM05D007233 ORTHO05D009043 2.4e-40 169.1 142 57.0
QL01p014111 Quercus lobata HOM05D007233 ORTHO05D009043 2.4e-40 169.1 133 60.2
RcHm_v2.0_Chr5g0055931 Rosa chinensis HOM05D007233 ORTHO05D009043 2.4e-40 169.1 137 58.4
CsaV3_1G014310 Cucumis sativus L. HOM05D007233 ORTHO05D009043 4.2e-40 168.3 138 58.7
MELO3C004843.2 Cucumis melo HOM05D007233 ORTHO05D009043 1.6e-39 166.4 138 58.7
PGSC0003DMG400000464 Solanum tuberosum HOM05D007233 ORTHO05D009043 1.6e-39 166.4 140 55.0
Solyc11g066690.2 Solanum lycopersicum HOM05D007233 ORTHO05D009043 2.7e-39 165.6 140 55.0
Sopen11g026420 Solanum pennellii HOM05D007233 ORTHO05D009043 2.7e-39 165.6 140 55.0
DCAR_015489 Daucus carota HOM05D007233 ORTHO05D009043 3.5e-39 165.2 139 57.6
CAN.G644.46 Capsicum annuum HOM05D007233 ORTHO05D009043 4.6e-39 164.9 140 57.1
arahy.Tifrunner.gnm1.ann1.5NF9YD Arachis hypogaea HOM05D007233 ORTHO05D009043 7.8e-39 164.1 160 52.5
HanXRQChr11g0345871 Helianthus annuus HOM05D007233 ORTHO05D009043 7.8e-39 164.1 139 57.6
Aqoxy1G01014 Aquilegia oxysepala HOM05D007233 ORTHO05D009043 1.7e-38 162.9 133 57.1
Prupe.6G116400 Prunus persica HOM05D007233 ORTHO05D009043 2.3e-38 162.5 136 56.6
Hund07722 Selenicereus undatus HOM05D007233 ORTHO05D009043 3.0e-38 162.2 138 56.5
Nitab4.5_0000442g0180 Nicotiana tabacum HOM05D007233 ORTHO05D009043 3.9e-38 161.8 135 58.5
AUR62031769 Chenopodium quinoa HOM05D007233 ORTHO05D009043 1.1e-37 160.2 142 53.5
Eucgr.F03331 Eucalyptus grandis HOM05D007233 ORTHO05D009043 1.1e-37 160.2 147 55.1
Peaxi162Scf00150g00710 Petunia axillaris HOM05D007233 ORTHO05D009043 2.5e-37 159.1 140 55.0
ECA248G0451 Erigeron canadensis HOM05D007233 ORTHO05D009043 1.6e-36 156.4 138 53.6
Dinv29405 Davidia involucrata HOM05D007233 ORTHO05D009043 6.2e-36 154.5 171 46.8
CANSAT78G0435 Cannabis sativa HOM05D007233 ORTHO05D009043 8.1e-36 154.1 140 55.0
ATR0665G357 Amborella trichopoda HOM05D007233 ORTHO05D009043 2.0e-34 149.4 134 54.5
Ah.01g016160 Amaranthus hybridus HOM05D007233 ORTHO05D009043 7.6e-34 147.5 145 51.0
MD11G1153700 Malus domestica HOM05D007233 ORTHO05D009043 2.9e-33 145.6 136 54.4
MBI04_g22192_MAGBIO Magnolia biondii HOM05D007233 ORTHO05D009043 4.2e-32 141.7 109 58.7
PSO063G0378 Papaver somniferum HOM05D007233 ORTHO05D009043 1.2e-31 140.2 137 53.3
PSO339G4613 Papaver somniferum HOM05D007233 ORTHO05D009043 1.0e-30 137.1 137 51.8
Atru.chr3.3421 Acer truncatum HOM05D007233 ORTHO05D009043 3.6e-28 128.6 99 58.6
Gorai.013G259000 Gossypium raimondii HOM05D007233 ORTHO05D009043 6.2e-28 127.9 119 54.6
Cpa.g.sc47.40 Carica papaya HOM05D007233 ORTHO05D009043 2.4e-27 125.9 103 59.2
ClCG08G000500 Citrullus lanatus HOM05D007233 ORTHO05D009043 1.4e-24 116.7 103 57.3
Pp3c26_4940 Physcomitrium patens HOM05D007233 ORTHO05D009043 4.2e-24 115.2 141 48.2
Pp3c26_4950 Physcomitrium patens HOM05D007233 ORTHO05D009043 4.2e-24 115.2 141 48.2
Cfa010203 Carpinus fangiana HOM05D007233 ORTHO05D009043 3.5e-23 112.1 98 58.2
Nn6g35132 Nelumbo nucifera HOM05D007233 ORTHO05D009043 3.5e-23 112.1 82 58.5
TWI31G0123 Tripterygium wilfordii HOM05D007233 ORTHO05D009043 6.0e-23 111.3 123 47.2
Zm00001eb053200 Zea mays HOM05D007233 ORTHO05D009043 3.0e-22 109.0 143 44.8
Cfa020420 Carpinus fangiana HOM05D007233 ORTHO05D009043 3.9e-22 108.6 95 55.8
Os03g0684300 Oryza sativa ssp. japonica HOM05D007233 ORTHO05D009043 1.9e-21 106.3 142 40.8
Haze_23472 Corylus avellana HOM05D007233 ORTHO05D009043 3.3e-21 105.5 138 44.9
arahy.Tifrunner.gnm1.ann1.9UEW9D Arachis hypogaea HOM05D007233 ORTHO05D009043 5.6e-21 104.8 126 43.7
Haze_23479 Corylus avellana HOM05D007233 ORTHO05D009043 6.2e-20 101.3 94 53.2
Psat0s3169g0040 Pisum sativum HOM05D007233 ORTHO05D009043 8.1e-20 100.9 106 53.8
Haze_23491 Corylus avellana HOM05D007233 ORTHO05D009043 1.8e-19 99.8 147 40.8
Mapoly0016s0182 Marchantia polymorpha HOM05D007233 ORTHO05D009043 5.3e-19 98.2 135 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3909 Anthoceros agrestis HOM05D007233 ORTHO05D009043 1.2e-18 97.1 109 45.0
Sc12g0003860 Simmondsia chinensis HOM05D007233 ORTHO05D009043 5.5e-16 88.2 83 53.0
Duzib168G0428 Durio zibethinus HOM05D007233 ORTHO05D009043 7.9e-15 84.3 156 37.8
Oeu035529.3 Olea europaea HOM05D007233 ORTHO05D009043 1.5e-13 80.1 85 49.4
CDE02G1642 Ceratophyllum demersum HOM05D007233 ORTHO05D009043 1.3e-12 77.0 86 48.8
Haze_23488 Corylus avellana HOM05D007233 ORTHO05D009043 8.2e-12 74.3 81 50.6
Oeu000616.2 Olea europaea HOM05D007233 ORTHO05D009043 9.0e-11 70.9 88 44.3
arahy.Tifrunner.gnm1.ann1.3ZRX2Z Arachis hypogaea HOM05D007233 ORTHO05D009043 6.5e-09 64.7 70 45.7
Potri.002G256001 Populus trichocarpa HOM05D007233 ORTHO05D009043 2.3e-06 56.2 40 65.0


User provided reference genes

Program Settings