Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR007450 Cardamine hirsuta HOM05D006284 ORTHO05D007793 1.9e-74 282.3 138 100.0
AL1G17850 Arabidopsis lyrata HOM05D006284 ORTHO05D007793 6.1e-68 260.8 138 90.6
BcaC07g41981 Brassica carinata HOM05D006284 ORTHO05D007793 2.3e-67 258.8 138 89.1
BcaC07g42491 Brassica carinata HOM05D006284 ORTHO05D007793 2.3e-67 258.8 138 89.1
BcaC07g42493 Brassica carinata HOM05D006284 ORTHO05D007793 2.3e-67 258.8 138 89.9
C08p50410 Brassica napus HOM05D006284 ORTHO05D007793 2.3e-67 258.8 138 89.1
BolC8t52569H Brassica oleracea HOM05D006284 ORTHO05D007793 2.3e-67 258.8 138 89.1
Carub.0001s0699 Capsella rubella HOM05D006284 ORTHO05D007793 2.3e-67 258.8 138 89.9
Thhalv10009069m.g Eutrema salsugineum HOM05D006284 ORTHO05D007793 2.3e-67 258.8 138 89.9
AT1G07645 Arabidopsis thaliana HOM05D006284 ORTHO05D007793 3.0e-67 258.5 138 89.9
A09p66230 Brassica napus HOM05D006284 ORTHO05D007793 2.0e-66 255.8 138 88.4
BraA09t41961Z Brassica rapa HOM05D006284 ORTHO05D007793 7.4e-66 253.8 138 87.7
BcaC07g42490 Brassica carinata HOM05D006284 ORTHO05D007793 8.2e-65 250.4 139 87.8
Sp1g06380 Schrenkiella parvula HOM05D006284 ORTHO05D007793 8.2e-65 250.4 138 87.0
A06p04820 Brassica napus HOM05D006284 ORTHO05D007793 2.4e-64 248.8 139 87.8
C05p05670 Brassica napus HOM05D006284 ORTHO05D007793 3.1e-64 248.4 139 87.8
BraA06t23686Z Brassica rapa HOM05D006284 ORTHO05D007793 3.1e-64 248.4 138 87.7
BolC5t29337H Brassica oleracea HOM05D006284 ORTHO05D007793 4.1e-64 248.1 138 87.7
Aa31sc281G30 Aethionema arabicum HOM05D006284 ORTHO05D007793 2.6e-63 245.4 135 88.1
Atru.chr3.3846 Acer truncatum HOM05D006284 ORTHO05D007793 5.7e-58 227.6 134 80.6
QL01p032751 Quercus lobata HOM05D006284 ORTHO05D007793 5.7e-58 227.6 134 81.3
Hma1.2p1_1897F.1_g306861 Hydrangea macrophylla HOM05D006284 ORTHO05D007793 2.2e-57 225.7 134 79.1
Medtr4g063500 Medicago truncatula HOM05D006284 ORTHO05D007793 8.2e-57 223.8 135 77.8
Cpa.g.sc190.6 Carica papaya HOM05D006284 ORTHO05D007793 1.1e-56 223.4 129 82.2
CiPaw.13G097000 Carya illinoinensis HOM05D006284 ORTHO05D007793 1.1e-56 223.4 134 78.4
Psat7g217680 Pisum sativum HOM05D006284 ORTHO05D007793 3.1e-56 221.9 137 75.2
Haze_24061 Corylus avellana HOM05D006284 ORTHO05D007793 1.5e-55 219.5 134 78.4
arahy.Tifrunner.gnm1.ann1.W3SBYC Arachis hypogaea HOM05D006284 ORTHO05D007793 2.0e-55 219.2 135 77.8
THA.LOC104800652 Tarenaya hassleriana HOM05D006284 ORTHO05D007793 2.0e-55 219.2 134 76.1
Dinv03613 Davidia involucrata HOM05D006284 ORTHO05D007793 2.6e-55 218.8 134 76.9
GSVIVG01025000001 Vitis vinifera HOM05D006284 ORTHO05D007793 2.6e-55 218.8 129 79.8
FAN11G1150 Fragaria x ananassa HOM05D006284 ORTHO05D007793 3.5e-55 218.4 134 76.9
FAN21G0749 Fragaria x ananassa HOM05D006284 ORTHO05D007793 3.5e-55 218.4 134 76.9
Ca_19180_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 4.5e-55 218.0 137 73.7
Ca_31183_v3 Cicer arietinum L. HOM05D006284 ORTHO05D007793 4.5e-55 218.0 137 73.7
FAN16G2200 Fragaria x ananassa HOM05D006284 ORTHO05D007793 7.7e-55 217.2 134 76.1
vmacro14530 Vaccinium macrocarpon HOM05D006284 ORTHO05D007793 7.7e-55 217.2 134 76.1
Sabra16G0143200 Salix brachista HOM05D006284 ORTHO05D007793 1.3e-54 216.5 136 75.7
arahy.Tifrunner.gnm1.ann1.6H51DS Arachis hypogaea HOM05D006284 ORTHO05D007793 1.7e-54 216.1 135 77.0
Manes.11G132300 Manihot esculenta HOM05D006284 ORTHO05D007793 1.7e-54 216.1 136 72.8
Rhsim01G0226200 Rhododendron simsii HOM05D006284 ORTHO05D007793 1.7e-54 216.1 134 75.4
Lj3g0026697 Lotus japonicus HOM05D006284 ORTHO05D007793 2.2e-54 215.7 136 76.5
PSO339G4936 Papaver somniferum HOM05D006284 ORTHO05D007793 2.9e-54 215.3 135 75.6
Prupe.6G080800 Prunus persica HOM05D006284 ORTHO05D007793 2.9e-54 215.3 135 74.1
Thecc.09G324900 Theobroma cacao HOM05D006284 ORTHO05D007793 3.8e-54 214.9 135 74.8
RcHm_v2.0_Chr5g0063801 Rosa chinensis HOM05D006284 ORTHO05D007793 5.0e-54 214.5 134 76.1
Gorai.009G100800 Gossypium raimondii HOM05D006284 ORTHO05D007793 6.5e-54 214.2 136 74.3
ClCG02G020310 Citrullus lanatus HOM05D006284 ORTHO05D007793 1.1e-53 213.4 134 76.1
Gohir.A05G097100 Gossypium hirsutum HOM05D006284 ORTHO05D007793 1.5e-53 213.0 136 73.5
Lalb_Chr01g0003741 Lupinus albus HOM05D006284 ORTHO05D007793 1.5e-53 213.0 134 76.9
Potri.001G237500 Populus trichocarpa HOM05D006284 ORTHO05D007793 1.5e-53 213.0 134 73.1
HanXRQChr15g0493271 Helianthus annuus HOM05D006284 ORTHO05D007793 1.9e-53 212.6 135 74.8
Sed0023805 Sechium edule HOM05D006284 ORTHO05D007793 1.9e-53 212.6 134 76.1
VMungo1127G1430 Vigna mungo HOM05D006284 ORTHO05D007793 1.9e-53 212.6 131 77.9
MSTRG.15272 Avicennia marina HOM05D006284 ORTHO05D007793 2.5e-53 212.2 136 74.3
COL.COLO4_18479 Corchorus olitorius HOM05D006284 ORTHO05D007793 2.5e-53 212.2 135 74.1
ECA247G3393 Erigeron canadensis HOM05D006284 ORTHO05D007793 2.5e-53 212.2 135 74.8
Eucgr.B02382 Eucalyptus grandis HOM05D006284 ORTHO05D007793 5.5e-53 211.1 132 73.5
TAR623G0100 Trochodendron aralioides HOM05D006284 ORTHO05D007793 5.5e-53 211.1 136 74.3
Aqoxy4G02964 Aquilegia oxysepala HOM05D006284 ORTHO05D007793 7.2e-53 210.7 131 74.8
DCAR_015613 Daucus carota HOM05D006284 ORTHO05D007793 7.2e-53 210.7 136 72.8
Migut.L00518 Erythranthe guttata HOM05D006284 ORTHO05D007793 7.2e-53 210.7 135 74.8
Lsat_1_v5_gn_5_183840 Lactuca sativa HOM05D006284 ORTHO05D007793 1.2e-52 209.9 135 74.8
PSO384G0339 Papaver somniferum HOM05D006284 ORTHO05D007793 1.2e-52 209.9 135 74.1
Duzib168G1259 Durio zibethinus HOM05D006284 ORTHO05D007793 1.6e-52 209.5 135 72.6
Phvul.011G065500 Phaseolus vulgaris HOM05D006284 ORTHO05D007793 1.6e-52 209.5 131 76.3
MELO3C013690.2 Cucumis melo HOM05D006284 ORTHO05D007793 2.7e-52 208.8 134 73.9
EL10Ac7g15985 Beta vulgaris HOM05D006284 ORTHO05D007793 3.6e-52 208.4 134 74.6
Lsat_1_v5_gn_9_22581 Lactuca sativa HOM05D006284 ORTHO05D007793 3.6e-52 208.4 135 74.8
MD11G1144900 Malus domestica HOM05D006284 ORTHO05D007793 3.6e-52 208.4 134 73.1
Sc06g0008270 Simmondsia chinensis HOM05D006284 ORTHO05D007793 4.7e-52 208.0 131 74.0
Glyma.12G064500 Glycine max HOM05D006284 ORTHO05D007793 8.0e-52 207.2 130 76.2
SalBow5G5166 Salvia bowleyana HOM05D006284 ORTHO05D007793 1.0e-51 206.8 135 73.3
CANSAT54G2008 Cannabis sativa HOM05D006284 ORTHO05D007793 1.8e-51 206.1 136 71.3
AUR62009602 Chenopodium quinoa HOM05D006284 ORTHO05D007793 1.8e-51 206.1 134 73.9
Gohir.D05G097250 Gossypium hirsutum HOM05D006284 ORTHO05D007793 2.3e-51 205.7 132 72.7
Nitab4.5_0001304g0050 Nicotiana tabacum HOM05D006284 ORTHO05D007793 3.0e-51 205.3 134 70.1
Oeu041449.2 Olea europaea HOM05D006284 ORTHO05D007793 3.0e-51 205.3 134 73.1
Solyc06g075990.4 Solanum lycopersicum HOM05D006284 ORTHO05D007793 3.0e-51 205.3 135 70.4
AUR62001816 Chenopodium quinoa HOM05D006284 ORTHO05D007793 5.2e-51 204.5 131 75.6
Sopen06g032410 Solanum pennellii HOM05D006284 ORTHO05D007793 6.7e-51 204.1 135 70.4
PGSC0003DMG400030315 Solanum tuberosum HOM05D006284 ORTHO05D007793 8.8e-51 203.8 135 71.1
Nitab4.5_0001838g0030 Nicotiana tabacum HOM05D006284 ORTHO05D007793 2.0e-50 202.6 129 71.3
Oeu056746.1 Olea europaea HOM05D006284 ORTHO05D007793 2.0e-50 202.6 134 70.9
Actinidia33860 Actinidia chinensis HOM05D006284 ORTHO05D007793 2.6e-50 202.2 136 71.3
Os03g0277500 Oryza sativa ssp. japonica HOM05D006284 ORTHO05D007793 3.3e-50 201.8 136 69.9
CAN.G394.47 Capsicum annuum HOM05D006284 ORTHO05D007793 5.7e-50 201.1 134 70.1
Peaxi162Scf00679g00212 Petunia axillaris HOM05D006284 ORTHO05D007793 7.4e-50 200.7 134 70.1
CsaV3_6G017010 Cucumis sativus L. HOM05D006284 ORTHO05D007793 9.7e-50 200.3 134 70.9
PGR102G0171 Punica granatum HOM05D006284 ORTHO05D007793 6.3e-49 197.6 135 70.4
Migut.L00567 Erythranthe guttata HOM05D006284 ORTHO05D007793 1.6e-47 193.0 127 73.2
SHI00991 Sapria himalayana HOM05D006284 ORTHO05D007793 1.9e-45 186.0 130 70.0
SGA_v2.0_scaffold606G53170 Striga asiatica HOM05D006284 ORTHO05D007793 2.5e-45 185.7 131 69.5
TWI79G0071 Tripterygium wilfordii HOM05D006284 ORTHO05D007793 2.7e-44 182.2 130 70.8
Zm00001eb012550 Zea mays HOM05D006284 ORTHO05D007793 1.4e-43 179.9 138 64.5
Gohir.A07G096400 Gossypium hirsutum HOM05D006284 ORTHO05D007793 3.7e-41 171.8 152 59.9
Ciclev10029580m.g Citrus clementina HOM05D006284 ORTHO05D007793 8.3e-41 170.6 116 74.1
Mapoly0004s0146 Marchantia polymorpha HOM05D006284 ORTHO05D007793 8.3e-41 170.6 128 64.8
Gorai.001G108700 Gossypium raimondii HOM05D006284 ORTHO05D007793 1.7e-38 162.9 127 63.8
Gohir.D07G100800 Gossypium hirsutum HOM05D006284 ORTHO05D007793 5.0e-38 161.4 153 56.2
Lj2A1058T40 Lonicera japonica HOM05D006284 ORTHO05D007793 3.6e-36 155.2 95 75.8
SMO165G0091 Selaginella moellendorffii HOM05D006284 ORTHO05D007793 8.0e-36 154.1 129 54.3
MBI14_g11686_MAGBIO Magnolia biondii HOM05D006284 ORTHO05D007793 1.0e-35 153.7 93 77.4
TPR.G10205 Trifolium pratense HOM05D006284 ORTHO05D007793 1.2e-34 150.2 101 68.3
FvH4_3g35580 Fragaria vesca HOM05D006284 ORTHO05D007793 3.4e-34 148.7 134 59.7
DCAR_018897 Daucus carota HOM05D006284 ORTHO05D007793 1.3e-33 146.7 94 73.4
Oeu033642.1 Olea europaea HOM05D006284 ORTHO05D007793 1.1e-32 143.7 101 68.3
Oeu056743.1 Olea europaea HOM05D006284 ORTHO05D007793 5.9e-31 137.9 97 68.0
CSS0000036 Camellia sinensis var. sinensis HOM05D006284 ORTHO05D007793 3.8e-30 135.2 134 52.2
FAN11G3292 Fragaria x ananassa HOM05D006284 ORTHO05D007793 6.6e-30 134.4 134 56.0
Oeu056758.1 Olea europaea HOM05D006284 ORTHO05D007793 1.9e-29 132.9 95 66.3
Oeu056739.1 Olea europaea HOM05D006284 ORTHO05D007793 2.8e-28 129.0 134 52.2
AagrBONN_evm.TU.Sc2ySwM_117.384 Anthoceros agrestis HOM05D006284 ORTHO05D007793 2.5e-21 105.9 129 45.7
Peaxi162Scf00406g00314 Petunia axillaris HOM05D006284 ORTHO05D007793 2.8e-20 102.4 134 43.3
SEGI_15500 Sequoiadendron giganteum HOM05D006284 ORTHO05D007793 3.6e-20 102.1 96 56.2
AagrBONN_evm.TU.Sc2ySwM_344.4820 Anthoceros agrestis HOM05D006284 ORTHO05D007793 8.0e-20 100.9 95 51.6
AagrBONN_evm.TU.Sc2ySwM_344.4822 Anthoceros agrestis HOM05D018382 ORTHO05D001873 1.7e-17 93.2 117 41.0
Pp3c19_1590 Physcomitrium patens HOM05D006284 ORTHO05D007793 4.9e-17 91.7 126 39.7
CANSAT21G1079 Cannabis sativa HOM05D002411 ORTHO05D002564 3.2e-16 89.0 60 70.0
MD07G1053700 Malus domestica HOM05D006284 ORTHO05D007793 4.1e-16 88.6 61 65.6
FvH4_3g35610 Fragaria vesca HOM05D006284 ORTHO05D007793 1.2e-15 87.0 134 39.6
MD14G1025700 Malus domestica HOM05D006284 ORTHO05D007793 4.6e-15 85.1 54 70.4
Cc01_g12610 Coffea canephora HOM05D006284 ORTHO05D007793 7.8e-15 84.3 49 77.6
TPR.G10968 Trifolium pratense HOM05D006284 ORTHO05D007793 1.1e-13 80.5 40 92.5
ATR0559G308 Amborella trichopoda HOM05D006284 ORTHO05D007793 4.9e-09 65.1 37 78.4
Ah.08g219180 Amaranthus hybridus HOM05D006284 ORTHO05D007793 4.1e-08 62.0 85 40.0
Cc01_g12620 Coffea canephora HOM05D006284 ORTHO05D007793 1.7e-06 56.6 30 83.3


User provided reference genes

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