Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 4.6e-28 127.1 60 100.0
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 4.4e-23 110.5 53 94.3
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 7.5e-23 109.8 53 92.5
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 7.5e-23 109.8 53 94.3
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 7.5e-23 109.8 53 94.3
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 7.5e-23 109.8 53 94.3
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 7.5e-23 109.8 53 94.3
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 7.5e-23 109.8 53 94.3
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 7.5e-23 109.8 53 94.3
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 7.5e-23 109.8 53 94.3
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 7.5e-23 109.8 53 94.3
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 7.5e-23 109.8 53 94.3
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 7.5e-23 109.8 53 94.3
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 9.8e-23 109.4 53 92.5
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 9.8e-23 109.4 53 92.5
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 3.7e-22 107.5 53 90.6
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 8.3e-22 106.3 53 88.7
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 1.1e-21 105.9 53 86.8
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 1.1e-21 105.9 53 86.8
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 1.1e-21 105.9 53 86.8
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 1.1e-21 105.9 53 86.8
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 1.4e-21 105.5 53 86.8
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 3.2e-21 104.4 53 86.8
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 5.4e-21 103.6 53 84.9
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 5.4e-21 103.6 53 84.9
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.6e-20 102.1 53 83.0
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 3.5e-20 100.9 53 84.9
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 3.5e-20 100.9 53 84.9
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.6e-20 100.5 53 83.0
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 7.8e-20 99.8 53 83.0
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 7.8e-20 99.8 53 84.9
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 7.8e-20 99.8 53 83.0
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 7.8e-20 99.8 53 83.0
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 7.8e-20 99.8 53 83.0
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 1.0e-19 99.4 57 78.9
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.7e-19 98.6 53 83.0
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 2.3e-19 98.2 53 83.0
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 3.0e-19 97.8 53 79.2
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 3.0e-19 97.8 53 81.1
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 3.0e-19 97.8 53 83.0
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 3.9e-19 97.4 53 81.1
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.9e-19 97.4 53 81.1
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 3.9e-19 97.4 53 81.1
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 5.0e-19 97.1 53 77.4
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 5.0e-19 97.1 53 81.1
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 6.6e-19 96.7 56 76.8
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 6.6e-19 96.7 53 81.1
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 8.6e-19 96.3 53 75.5
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 8.6e-19 96.3 53 79.2
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 8.6e-19 96.3 53 81.1
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.1e-18 95.9 53 79.2
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 1.5e-18 95.5 56 75.0
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 1.5e-18 95.5 59 69.5
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 1.5e-18 95.5 53 81.1
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 1.5e-18 95.5 53 77.4
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 1.9e-18 95.1 56 78.6
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 2.5e-18 94.7 53 81.1
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 2.5e-18 94.7 52 80.8
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 2.5e-18 94.7 53 79.2
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 3.3e-18 94.4 53 79.2
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 4.3e-18 94.0 53 75.5
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 4.3e-18 94.0 58 75.9
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 5.6e-18 93.6 56 71.4
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 5.6e-18 93.6 52 78.8
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 5.6e-18 93.6 53 79.2
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 5.6e-18 93.6 53 79.2
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 5.6e-18 93.6 59 67.8
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 9.5e-18 92.8 50 82.0
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 9.5e-18 92.8 53 79.2
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 9.5e-18 92.8 53 77.4
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 1.6e-17 92.0 53 75.5
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 2.1e-17 91.7 53 75.5
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 3.6e-17 90.9 53 75.5
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 4.7e-17 90.5 53 75.5
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 6.2e-17 90.1 52 76.9
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 6.2e-17 90.1 57 68.4
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 1.4e-16 89.0 53 77.4
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.8e-16 88.6 52 76.9
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.8e-16 88.6 52 76.9
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 1.8e-16 88.6 52 76.9
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 1.8e-16 88.6 52 73.1
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 4.0e-16 87.4 57 64.9
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 4.0e-16 87.4 51 72.5
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 8.9e-16 86.3 51 72.5
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 8.9e-16 86.3 52 75.0
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.5e-15 85.5 54 75.9
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 2.0e-15 85.1 87 52.9
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 4.4e-15 84.0 53 79.2
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 9.8e-15 82.8 53 71.7
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 9.8e-15 82.8 51 80.4
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 2.2e-14 81.6 56 69.6
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 2.2e-14 81.6 59 67.8
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 2.9e-14 81.3 56 69.6
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 2.9e-14 81.3 56 69.6
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 2.9e-14 81.3 53 69.8
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 4.9e-14 80.5 53 71.7
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 2.4e-13 78.2 47 78.7
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 3.2e-13 77.8 52 59.6
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 5.4e-13 77.0 53 71.7
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 7.1e-13 76.6 53 69.8
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 9.2e-13 76.3 43 79.1
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 9.2e-13 76.3 52 65.4
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 9.2e-13 76.3 50 68.0
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 4.6e-12 73.9 47 76.6
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.0e-11 72.8 95 43.2
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.5e-10 68.9 52 55.8
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.6e-10 67.0 31 93.5
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 9.5e-10 66.2 31 93.5
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 1.6e-09 65.5 53 60.4
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 2.1e-09 65.1 34 82.4
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 3.6e-09 64.3 50 54.0
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 1.1e-08 62.8 31 83.9
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 1.4e-08 62.4 47 68.1
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 2.3e-08 61.6 35 80.0
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 4.0e-08 60.8 31 83.9
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 7.6e-07 56.6 54 53.7
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 7.6e-07 56.6 31 80.6
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 9.9e-07 56.2 79 46.8
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 9.9e-07 56.2 79 46.8
AagrBONN_evm.TU.Sc2ySwM_228.3660 Anthoceros agrestis HOM05D006514 ORTHO05D008138 2.9e-06 54.7 36 63.9
BolC4t25707H Brassica oleracea HOM05D040072 ORTHO05D033253 3.7e-06 54.3 52 55.8
Pp3c4_25750 Physcomitrium patens HOM05D006514 ORTHO05D008138 6.4e-06 53.5 44 54.5
Os07g0447200 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 8.4e-06 53.1 31 67.7


User provided reference genes

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