Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR004900 Cardamine hirsuta HOM05D007072 ORTHO05D008841 1.4e-102 376.3 194 100.0
Thhalv10008840m.g Eutrema salsugineum HOM05D007072 ORTHO05D008841 5.3e-78 294.7 197 82.2
Carub.0001s0473 Capsella rubella HOM05D007072 ORTHO05D008841 5.9e-77 291.2 202 78.7
Sp1g04270 Schrenkiella parvula HOM05D007072 ORTHO05D008841 1.0e-76 290.4 211 76.8
AL1G15220 Arabidopsis lyrata HOM05D007072 ORTHO05D008841 1.1e-75 287.0 200 79.5
AT1G05385 Arabidopsis thaliana HOM05D007072 ORTHO05D008841 2.7e-74 282.3 200 77.5
C05p03740 Brassica napus HOM05D007072 ORTHO05D008841 4.7e-74 281.6 200 77.5
BcaB02g06864 Brassica carinata HOM05D007072 ORTHO05D008841 1.0e-73 280.4 200 76.5
BolC5t29149H Brassica oleracea HOM05D007072 ORTHO05D008841 5.2e-73 278.1 200 76.5
BraA10t42680Z Brassica rapa HOM05D007072 ORTHO05D008841 7.5e-72 274.2 199 76.4
A10p04090 Brassica napus HOM05D007072 ORTHO05D008841 6.3e-71 271.2 199 75.9
Aa31LG1G19230 Aethionema arabicum HOM05D007072 ORTHO05D008841 1.5e-64 250.0 208 67.8
THA.LOC104800963 Tarenaya hassleriana HOM05D007072 ORTHO05D008841 4.4e-56 221.9 216 58.8
Duzib212G0309 Durio zibethinus HOM05D007072 ORTHO05D008841 1.2e-53 213.8 187 60.4
COL.COLO4_04736 Corchorus olitorius HOM05D007072 ORTHO05D008841 2.5e-51 206.1 168 66.1
Eucgr.L01273 Eucalyptus grandis HOM05D007072 ORTHO05D008841 9.5e-51 204.1 212 54.2
TPR.G5523 Trifolium pratense HOM05D007072 ORTHO05D008841 2.1e-50 203.0 188 61.2
Lj5g0010864 Lotus japonicus HOM05D007072 ORTHO05D008841 2.8e-50 202.6 209 57.9
Gohir.A10G168700 Gossypium hirsutum HOM05D007072 ORTHO05D008841 4.7e-50 201.8 195 57.9
Eucgr.L02492 Eucalyptus grandis HOM05D007072 ORTHO05D008841 6.1e-50 201.4 212 53.8
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 1.0e-49 200.7 195 57.4
Thecc.04G231900 Theobroma cacao HOM05D007072 ORTHO05D008841 1.8e-49 199.9 169 62.7
Atru.ctg752_3.79 Acer truncatum HOM05D007072 ORTHO05D008841 2.3e-49 199.5 179 62.6
Ca_10901_v3 Cicer arietinum L. HOM05D007072 ORTHO05D008841 2.3e-49 199.5 182 59.3
Glyma.07G018200 Glycine max HOM05D007072 ORTHO05D008841 2.3e-49 199.5 181 61.3
Gohir.D10G174900 Gossypium hirsutum HOM05D007072 ORTHO05D008841 4.0e-49 198.7 195 57.4
PGR142G1968 Punica granatum HOM05D007072 ORTHO05D008841 4.0e-49 198.7 211 56.4
ClCG06G006220 Citrullus lanatus HOM05D007072 ORTHO05D008841 6.8e-49 198.0 210 58.1
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 6.8e-49 198.0 165 64.2
MD16G1193700 Malus domestica HOM05D007072 ORTHO05D008841 6.8e-49 198.0 173 63.6
CiPaw.01G165800 Carya illinoinensis HOM05D007072 ORTHO05D008841 1.2e-48 197.2 165 63.0
Haze_00902 Corylus avellana HOM05D007072 ORTHO05D008841 1.5e-48 196.8 175 62.9
Haze_03895 Corylus avellana HOM05D007072 ORTHO05D008841 1.5e-48 196.8 166 66.3
Medtr1g103810 Medicago truncatula HOM05D007072 ORTHO05D008841 2.0e-48 196.4 182 58.8
Manes.03G178700 Manihot esculenta HOM05D007072 ORTHO05D008841 3.4e-48 195.7 163 63.2
Cc03_g03760 Coffea canephora HOM05D007072 ORTHO05D008841 5.7e-48 194.9 211 53.6
Prupe.1G013400 Prunus persica HOM05D007072 ORTHO05D008841 1.3e-47 193.7 132 72.0
CANSAT78G1446 Cannabis sativa HOM05D007072 ORTHO05D008841 1.7e-47 193.4 168 60.7
Sed0002009 Sechium edule HOM05D007072 ORTHO05D008841 1.7e-47 193.4 131 74.0
Glyma.08G203200 Glycine max HOM05D007072 ORTHO05D008841 2.2e-47 193.0 181 58.6
Actinidia40146 Actinidia chinensis HOM05D007072 ORTHO05D008841 3.7e-47 192.2 173 61.8
Sc19g0004160 Simmondsia chinensis HOM05D007072 ORTHO05D008841 4.9e-47 191.8 161 62.7
Phvul.007G057300 Phaseolus vulgaris HOM05D007072 ORTHO05D008841 8.3e-47 191.0 181 58.0
Hund12130 Selenicereus undatus HOM05D007072 ORTHO05D008841 8.3e-47 191.0 174 59.8
Dinv13993 Davidia involucrata HOM05D007072 ORTHO05D008841 1.1e-46 190.7 166 62.0
GSVIVG01017974001 Vitis vinifera HOM05D007072 ORTHO05D008841 1.1e-46 190.7 210 52.9
DCAR_030636 Daucus carota HOM05D007072 ORTHO05D008841 1.4e-46 190.3 174 60.3
Nn4g26321 Nelumbo nucifera HOM05D007072 ORTHO05D008841 1.4e-46 190.3 213 51.2
QL06p002505 Quercus lobata HOM05D007072 ORTHO05D008841 1.4e-46 190.3 171 62.6
TAR636G0958 Trochodendron aralioides HOM05D007072 ORTHO05D008841 2.4e-46 189.5 167 62.3
Psat6g207520 Pisum sativum HOM05D007072 ORTHO05D008841 4.1e-46 188.7 190 55.8
CSS0014065 Camellia sinensis var. sinensis HOM05D007072 ORTHO05D008841 7.0e-46 188.0 211 53.1
EL10Ac2g03959 Beta vulgaris HOM05D007072 ORTHO05D008841 9.2e-46 187.6 166 63.9
CsaV3_7G022520 Cucumis sativus L. HOM05D007072 ORTHO05D008841 9.2e-46 187.6 157 65.6
VMungo0720G2696 Vigna mungo HOM05D007072 ORTHO05D008841 9.2e-46 187.6 181 58.0
Potri.008G152800 Populus trichocarpa HOM05D007072 ORTHO05D008841 1.2e-45 187.2 169 60.4
Rhsim04G0202300 Rhododendron simsii HOM05D007072 ORTHO05D008841 1.2e-45 187.2 189 58.2
Ah.04g154560 Amaranthus hybridus HOM05D007072 ORTHO05D008841 3.5e-45 185.7 135 68.9
MELO3C012648.2 Cucumis melo HOM05D007072 ORTHO05D008841 4.6e-45 185.3 157 64.3
CAN.G490.4 Capsicum annuum HOM05D007072 ORTHO05D008841 5.9e-45 184.9 150 65.3
Hma1.2p1_1344F.1_g277130 Hydrangea macrophylla HOM05D007072 ORTHO05D008841 5.9e-45 184.9 211 52.6
EL10Ac4g08230 Beta vulgaris HOM05D007072 ORTHO05D008841 7.8e-45 184.5 132 72.7
arahy.Tifrunner.gnm1.ann1.KKZ0LN Arachis hypogaea HOM05D007072 ORTHO05D008841 1.0e-44 184.1 212 54.2
TWI09G0189 Tripterygium wilfordii HOM05D007072 ORTHO05D008841 1.0e-44 184.1 163 60.7
Aqoxy5G00468 Aquilegia oxysepala HOM05D007072 ORTHO05D008841 1.3e-44 183.7 197 54.3
arahy.Tifrunner.gnm1.ann1.0J3LZT Arachis hypogaea HOM05D007072 ORTHO05D008841 1.3e-44 183.7 212 54.2
Solyc09g076030.4 Solanum lycopersicum HOM05D007072 ORTHO05D008841 3.9e-44 182.2 204 55.4
PGSC0003DMG400030078 Solanum tuberosum HOM05D007072 ORTHO05D008841 3.9e-44 182.2 181 58.6
ECA240G2950 Erigeron canadensis HOM05D007072 ORTHO05D008841 5.0e-44 181.8 161 61.5
HanXRQChr03g0062521 Helianthus annuus HOM05D007072 ORTHO05D008841 5.0e-44 181.8 132 68.2
Lsat_1_v5_gn_7_66201 Lactuca sativa HOM05D007072 ORTHO05D008841 6.6e-44 181.4 159 60.4
Oeu031231.1 Olea europaea HOM05D007072 ORTHO05D008841 6.6e-44 181.4 141 67.4
PSO675G2050 Papaver somniferum HOM05D007072 ORTHO05D008841 8.6e-44 181.0 165 62.4
Sopen09g030860 Solanum pennellii HOM05D007072 ORTHO05D008841 8.6e-44 181.0 182 58.8
Nitab4.5_0000043g0120 Nicotiana tabacum HOM05D007072 ORTHO05D008841 1.1e-43 180.6 159 61.0
SalBow2G0955 Salvia bowleyana HOM05D007072 ORTHO05D008841 2.5e-43 179.5 160 63.8
Sabra08G0116400 Salix brachista HOM05D007072 ORTHO05D008841 3.3e-43 179.1 201 52.2
ATR0733G024 Amborella trichopoda HOM05D007072 ORTHO05D008841 4.3e-43 178.7 161 57.8
FvH4_4g15520 Fragaria vesca HOM05D007072 ORTHO05D008841 5.6e-43 178.3 156 62.2
FAN12G0870 Fragaria x ananassa HOM05D007072 ORTHO05D008841 5.6e-43 178.3 156 62.2
RcHm_v2.0_Chr4g0416241 Rosa chinensis HOM05D007072 ORTHO05D008841 5.6e-43 178.3 163 59.5
FAN07G0953 Fragaria x ananassa HOM05D007072 ORTHO05D008841 9.5e-43 177.6 156 62.2
Peaxi162Scf00092g01012 Petunia axillaris HOM05D007072 ORTHO05D008841 9.5e-43 177.6 135 67.4
arahy.Tifrunner.gnm1.ann1.8ZA7N6 Arachis hypogaea HOM05D007072 ORTHO05D008841 1.2e-42 177.2 212 50.9
AUR62034750 Chenopodium quinoa HOM05D007072 ORTHO05D008841 1.2e-42 177.2 158 58.2
PSO732G0121 Papaver somniferum HOM05D007072 ORTHO05D008841 1.2e-42 177.2 168 60.1
AUR62033624 Chenopodium quinoa HOM05D007072 ORTHO05D008841 1.6e-42 176.8 132 66.7
Lalb_Chr02g0140581 Lupinus albus HOM05D007072 ORTHO05D008841 2.1e-42 176.4 136 62.5
unitig_32.g10817 Utricularia gibba HOM05D005563 ORTHO05D006667 8.0e-42 174.5 191 51.8
Rhsim04G0202400 Rhododendron simsii HOM05D007072 ORTHO05D008841 1.0e-41 174.1 142 62.0
Lj3A735T48 Lonicera japonica HOM05D007072 ORTHO05D008841 1.4e-41 173.7 194 51.0
Migut.G00337 Erythranthe guttata HOM05D007072 ORTHO05D008841 2.3e-41 172.9 152 60.5
arahy.Tifrunner.gnm1.ann1.DZ7G8Z Arachis hypogaea HOM05D007072 ORTHO05D008841 8.9e-41 171.0 206 51.0
FAN22G0737 Fragaria x ananassa HOM05D007072 ORTHO05D008841 1.2e-40 170.6 136 63.2
SGA_v2.0_scaffold124G33503 Striga asiatica HOM05D007072 ORTHO05D008841 2.6e-40 169.5 173 56.1
Os03g0747700 Oryza sativa ssp. japonica HOM05D007072 ORTHO05D008841 4.4e-40 168.7 139 67.6
Zm00001eb214960 Zea mays HOM05D007072 ORTHO05D008841 2.2e-39 166.4 153 61.4
Pp3c8_18010 Physcomitrium patens HOM05D007072 ORTHO05D008841 1.0e-36 157.5 169 49.1
HPP92_001955 Vanilla planifolia HOM05D007072 ORTHO05D008841 1.5e-35 153.7 122 63.1
Actinidia27161 Actinidia chinensis HOM05D007072 ORTHO05D008841 6.8e-33 144.8 180 50.6
CDE10G0502 Ceratophyllum demersum HOM05D007072 ORTHO05D008841 2.6e-32 142.9 101 70.3
Mapoly0045s0091 Marchantia polymorpha HOM05D007072 ORTHO05D008841 5.4e-30 135.2 164 47.0
SMO347G0486 Selaginella moellendorffii HOM05D007072 ORTHO05D008841 6.6e-28 128.3 135 48.1
CBR_g41625 Chara braunii HOM05D007072 ORTHO05D008841 2.8e-26 122.9 135 43.7
Nitab4.5_0001560g0030 Nicotiana tabacum HOM05D007072 ORTHO05D008841 2.3e-25 119.8 128 55.5
SEGI_01006 Sequoiadendron giganteum HOM05D007072 ORTHO05D008841 1.3e-23 114.0 125 52.8
MBI05_g43294_MAGBIO Magnolia biondii HOM05D007072 ORTHO05D008841 8.6e-20 101.3 70 71.4
RcHm_v2.0_Chr4g0430981 Rosa chinensis HOM05D007072 ORTHO05D008841 2.2e-15 86.7 67 64.2
AagrBONN_evm.TU.Sc2ySwM_228.1232 Anthoceros agrestis HOM05D007072 ORTHO05D008841 4.9e-15 85.5 103 47.6
Cre02.g073850 Chlamydomonas reinhardtii HOM05D007072 ORTHO05D008841 1.1e-06 57.8 109 31.2


User provided reference genes

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