Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 4.2e-49 197.6 92 100.0
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 1.5e-43 179.1 87 94.3
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 2.0e-43 178.7 88 93.2
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 4.5e-43 177.6 88 92.0
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 4.5e-43 177.6 88 92.0
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 4.5e-43 177.6 88 92.0
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 5.9e-43 177.2 86 94.2
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 5.9e-43 177.2 86 94.2
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 5.9e-43 177.2 86 94.2
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 5.9e-43 177.2 86 94.2
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 7.7e-43 176.8 86 94.2
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 7.7e-43 176.8 86 94.2
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 7.7e-43 176.8 86 94.2
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 1.0e-42 176.4 87 92.0
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 6.5e-42 173.7 86 91.9
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 6.5e-42 173.7 86 90.7
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 5.2e-39 164.1 87 87.4
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 4.4e-38 161.0 87 85.1
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 7.4e-38 160.2 85 88.2
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 7.4e-38 160.2 85 88.2
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 7.4e-38 160.2 85 88.2
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 7.4e-38 160.2 85 88.2
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 1.7e-37 159.1 87 83.9
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 2.2e-37 158.7 87 85.1
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 2.2e-37 158.7 87 85.1
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 2.2e-37 158.7 83 89.2
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 2.8e-37 158.3 87 83.9
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 4.8e-37 157.5 87 82.8
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.8e-37 157.5 87 82.8
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 4.8e-37 157.5 87 82.8
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 4.8e-37 157.5 87 82.8
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 4.8e-37 157.5 87 82.8
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 4.8e-37 157.5 87 83.9
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 6.3e-37 157.1 87 82.8
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 1.4e-36 156.0 87 79.3
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.4e-36 156.0 87 81.6
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 1.8e-36 155.6 87 80.5
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 1.8e-36 155.6 82 85.4
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 2.4e-36 155.2 84 84.5
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 3.1e-36 154.8 87 81.6
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 7.0e-36 153.7 87 81.6
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 9.1e-36 153.3 84 84.5
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 9.1e-36 153.3 87 81.6
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 1.2e-35 152.9 87 80.5
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 1.6e-35 152.5 85 83.5
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 1.6e-35 152.5 87 80.5
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 2.0e-35 152.1 87 80.5
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 2.0e-35 152.1 84 83.3
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 2.6e-35 151.8 87 78.2
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 2.6e-35 151.8 82 85.4
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 3.5e-35 151.4 83 83.1
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 3.5e-35 151.4 84 82.1
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 4.5e-35 151.0 83 86.7
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 4.5e-35 151.0 87 80.5
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 4.5e-35 151.0 84 83.3
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 4.5e-35 151.0 87 77.0
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 4.5e-35 151.0 82 86.6
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 5.9e-35 150.6 84 83.3
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 5.9e-35 150.6 87 79.3
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 7.7e-35 150.2 85 81.2
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 7.7e-35 150.2 83 85.5
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 1.0e-34 149.8 82 84.1
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 1.0e-34 149.8 82 84.1
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 1.0e-34 149.8 82 85.4
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.3e-34 149.4 86 79.1
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 1.3e-34 149.4 84 82.1
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 1.3e-34 149.4 84 82.1
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 2.2e-34 148.7 84 82.1
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 3.8e-34 147.9 82 82.9
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 3.8e-34 147.9 85 83.5
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 3.8e-34 147.9 85 83.5
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 5.0e-34 147.5 87 78.2
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 5.0e-34 147.5 87 78.2
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 5.0e-34 147.5 83 84.3
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 5.0e-34 147.5 83 81.9
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 8.5e-34 146.7 86 77.9
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 1.1e-33 146.4 81 81.5
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 2.5e-33 145.2 83 83.1
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 3.2e-33 144.8 81 80.2
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 9.4e-33 143.3 84 81.0
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 1.2e-32 142.9 80 80.0
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.6e-32 142.5 81 80.2
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 1.6e-32 142.5 87 77.0
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 1.6e-32 142.5 83 80.7
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 2.1e-32 142.1 82 79.3
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 3.6e-32 141.4 83 81.9
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 6.1e-32 140.6 82 76.8
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 8.0e-32 140.2 82 80.5
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 1.0e-31 139.8 82 78.0
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 1.0e-31 139.8 83 77.1
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 1.4e-31 139.4 83 77.1
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 8.8e-31 136.7 108 65.7
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 2.0e-30 135.6 79 77.2
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 9.7e-30 133.3 82 78.0
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 9.7e-30 133.3 83 77.1
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 2.2e-29 132.1 82 76.8
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 2.7e-27 125.2 82 74.4
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 7.7e-27 123.6 68 79.4
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 1.7e-26 122.5 61 88.5
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 2.9e-26 121.7 64 85.9
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 2.9e-26 121.7 62 85.5
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 3.2e-25 118.2 61 86.9
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 1.8e-23 112.5 61 80.3
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 1.2e-16 89.7 62 59.7
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 1.6e-16 89.4 56 71.4
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 2.8e-16 88.6 49 81.6
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 1.2e-14 83.2 41 90.2
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 2.8e-13 78.6 55 61.8
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 9.2e-12 73.6 38 84.2
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 1.6e-11 72.8 61 55.7
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 4.5e-11 71.2 40 77.5
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 5.9e-11 70.9 41 78.0
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.1e-09 66.6 40 70.0


User provided reference genes

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