Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 0.0e+00 1140.2 694 100.0
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 4.3e-247 858.2 707 72.8
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 6.7e-232 807.7 729 75.4
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 3.7e-206 722.2 711 70.5
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 1.9e-202 709.9 711 66.9
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 5.5e-202 708.4 715 71.5
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 6.3e-198 694.9 711 69.5
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 6.3e-198 694.9 721 64.8
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 3.1e-197 692.6 711 67.9
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 5.4e-197 691.8 721 64.6
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 2.7e-196 689.5 718 68.9
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 1.7e-195 686.8 718 66.9
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 2.5e-194 682.9 972 55.0
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 9.5e-194 681.0 886 59.1
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 3.0e-192 676.0 723 68.0
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.8e-189 666.8 625 73.1
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 3.9e-171 605.9 709 63.6
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 5.6e-154 548.9 569 57.6
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 1.6e-148 530.8 733 54.3
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.3e-147 527.7 358 79.3
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.7e-97 361.3 241 78.4
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 6.6e-54 216.5 712 29.4
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 1.9e-53 214.9 711 27.7
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 2.5e-53 214.5 750 35.1
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 8.1e-52 209.5 714 27.6
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 6.8e-51 206.5 711 27.3
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 1.5e-50 205.3 771 27.6
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 5.8e-50 203.4 754 30.1
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 1.4e-48 198.7 771 30.6
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 2.4e-48 198.0 702 28.3
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 6.6e-46 189.9 748 31.7
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 8.6e-46 189.5 699 28.6
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 2.5e-45 188.0 699 28.6
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 3.3e-45 187.6 560 27.9
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 3.3e-45 187.6 747 30.0
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 1.2e-44 185.7 705 26.7
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 1.2e-44 185.7 701 28.8
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 2.8e-44 184.5 708 28.7
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 8.1e-44 183.0 760 28.2
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 1.1e-43 182.6 873 25.5
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.1e-43 182.6 771 26.3
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 3.1e-43 181.0 696 37.5
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 4.0e-43 180.6 702 28.2
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.5e-42 178.7 699 35.3
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 7.6e-42 176.4 726 27.1
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 9.9e-42 176.0 700 33.7
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 9.9e-42 176.0 703 35.7
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 2.2e-41 174.9 749 26.8
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 2.9e-41 174.5 699 34.2
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 2.9e-41 174.5 744 26.7
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 6.4e-41 173.3 699 34.9
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 6.4e-41 173.3 727 27.0
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 5.4e-40 170.2 546 28.4
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 1.2e-39 169.1 776 26.3
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 2.7e-39 167.9 747 25.6
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 7.8e-39 166.4 716 26.5
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 3.0e-38 164.5 699 25.6
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 6.6e-38 163.3 883 28.2
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 6.6e-38 163.3 707 26.2
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 3.3e-37 161.0 220 44.5
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 9.6e-37 159.5 181 47.0
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 1.2e-36 159.1 579 27.6
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 1.2e-36 159.1 181 47.0
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 1.6e-36 158.7 518 29.0
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 6.2e-36 156.8 226 39.8
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 8.1e-36 156.4 830 26.3
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 1.4e-35 155.6 740 26.1
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 3.1e-35 154.5 894 24.0
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 4.0e-35 154.1 221 41.6
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 5.3e-35 153.7 698 25.1
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 6.9e-35 153.3 709 26.1
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.2e-34 152.5 730 26.3
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 1.2e-34 152.5 696 25.1
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 5.8e-34 150.2 717 25.8
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 9.9e-34 149.4 554 33.6
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 8.4e-33 146.4 222 39.6
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 8.4e-33 146.4 784 25.5
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 2.1e-31 141.7 828 27.1
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 7.8e-31 139.8 792 24.2
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 1.5e-29 135.6 711 24.3
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.5e-29 135.6 258 38.0
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 4.3e-29 134.0 223 39.9
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 5.6e-29 133.7 705 24.0
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 1.6e-28 132.1 591 26.9
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 6.2e-28 130.2 814 24.1
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 2.4e-27 128.3 760 24.5
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 5.3e-27 127.1 710 23.2
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 6.9e-27 126.7 744 24.1
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 9.0e-27 126.3 710 23.1
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.5e-26 124.0 179 37.4
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 9.9e-26 122.9 228 33.8
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 9.9e-26 122.9 709 26.1
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 1.3e-25 122.5 222 36.0
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 4.9e-25 120.6 250 34.0
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 6.4e-25 120.2 715 26.0
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 6.4e-25 120.2 204 38.2
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 6.4e-25 120.2 250 34.0
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.2e-23 115.9 727 23.9
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.6e-23 115.5 716 22.6
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 3.5e-23 114.4 729 25.0
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 7.9e-23 113.2 538 26.0
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 7.9e-23 113.2 111 49.5
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 1.8e-22 112.1 227 36.6
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 2.5e-21 108.2 151 39.1
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 1.4e-19 102.4 201 35.8
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 2.4e-19 101.7 342 31.0
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 5.3e-19 100.5 182 35.7
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 4.5e-18 97.4 539 24.9
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 7.6e-18 96.7 713 22.4
BcaC07g36863 Brassica carinata HOM05D005385 ORTHO05D006768 1.3e-17 95.9 77 67.5
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.3e-17 95.9 525 35.8
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.2e-17 95.1 223 30.9
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.6e-15 89.0 224 33.0
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 2.7e-15 88.2 215 30.7
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 4.6e-15 87.4 178 29.8
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 6.0e-15 87.0 104 46.2
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.0e-14 86.3 164 40.2
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 5.3e-11 73.9 162 32.7
BcaB04g19303 Brassica carinata HOM05D005385 ORTHO05D006768 2.0e-10 72.0 53 67.9
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 7.6e-10 70.1 109 40.4
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 2.9e-09 68.2 657 22.1
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 4.9e-09 67.4 161 31.7
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.9e-08 65.5 209 33.0
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.9e-08 65.5 209 33.0
BcaB04g17601 Brassica carinata HOM05D005385 ORTHO05D039913 2.5e-08 65.1 41 73.2
Mapoly0147s0032 Marchantia polymorpha HOM05D005385 ORTHO05D006768 2.7e-07 61.6 97 36.1
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 3.5e-07 61.2 164 31.7
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 7.9e-07 60.1 111 38.7
C02p46800 Brassica napus HOM05D005385 ORTHO05D039913 1.0e-06 59.7 40 72.5


User provided reference genes

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