Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 1.0e-58 230.3 161 100.0
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 1.4e-52 209.9 141 92.2
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 9.3e-52 207.2 137 86.1
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 1.2e-51 206.8 142 91.5
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 6.0e-51 204.5 138 88.4
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 1.0e-50 203.8 138 81.9
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 2.5e-49 199.1 138 89.9
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 4.3e-49 198.4 138 79.7
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 4.8e-48 194.9 144 84.7
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 3.0e-42 175.6 139 83.5
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 3.0e-42 175.6 139 83.5
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 1.1e-41 173.7 139 82.7
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 1.1e-41 173.7 139 82.7
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 9.6e-41 170.6 139 82.0
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 3.7e-40 168.7 134 70.9
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 6.2e-40 167.9 139 79.9
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 1.1e-39 167.2 138 73.2
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 1.2e-35 153.7 138 68.1
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 2.3e-34 149.4 134 64.2
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 6.7e-34 147.9 134 64.2
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 1.5e-33 146.7 136 64.7
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 1.9e-33 146.4 108 75.9
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 1.9e-33 146.4 134 62.7
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 3.3e-33 145.6 134 62.7
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 7.4e-33 144.4 135 62.2
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 1.3e-32 143.7 137 61.3
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 1.3e-32 143.7 134 61.9
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 1.6e-32 143.3 134 62.7
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 1.6e-32 143.3 134 62.7
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 2.2e-32 142.9 134 61.9
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 2.8e-32 142.5 130 63.1
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 2.8e-32 142.5 130 63.1
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 4.8e-32 141.7 134 61.2
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 8.2e-32 141.0 116 72.4
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 8.2e-32 141.0 134 59.7
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 1.8e-31 139.8 102 81.4
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 2.4e-31 139.4 133 59.4
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 3.1e-31 139.0 134 59.0
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 5.3e-31 138.3 134 61.9
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 1.5e-30 136.7 134 61.2
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 2.0e-30 136.3 135 60.0
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 2.0e-30 136.3 134 58.2
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 2.6e-30 136.0 130 61.5
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 3.4e-30 135.6 102 79.4
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 7.6e-30 134.4 134 57.5
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 1.0e-29 134.0 99 79.8
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 1.0e-29 134.0 130 60.8
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 1.3e-29 133.7 134 56.7
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 1.3e-29 133.7 134 56.7
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 2.2e-29 132.9 98 73.5
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 5.0e-29 131.7 131 58.0
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 6.5e-29 131.3 143 58.7
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 8.5e-29 131.0 125 64.0
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 1.4e-28 130.2 134 53.0
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 3.2e-28 129.0 95 75.8
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 5.5e-28 128.3 132 54.5
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 7.2e-28 127.9 134 54.5
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 7.2e-28 127.9 134 55.2
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 1.2e-27 127.1 134 56.7
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 4.6e-27 125.2 160 51.2
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 6.1e-27 124.8 134 56.7
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 1.3e-26 123.6 160 50.6
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 3.9e-26 122.1 93 73.1
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 3.9e-26 122.1 96 67.7
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 6.7e-26 121.3 131 58.8
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 1.1e-25 120.6 130 57.7
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 1.9e-25 119.8 128 57.8
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 2.5e-25 119.4 130 53.1
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 4.3e-25 118.6 134 55.2
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 5.7e-25 118.2 132 53.8
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 5.7e-25 118.2 133 54.1
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 5.7e-25 118.2 89 73.0
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 9.7e-25 117.5 96 65.6
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 3.7e-24 115.5 139 51.1
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 4.8e-24 115.2 139 49.6
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 4.8e-24 115.2 137 51.1
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 8.2e-24 114.4 128 53.9
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 1.4e-23 113.6 130 51.5
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 2.4e-23 112.8 130 52.3
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 3.1e-23 112.5 134 53.0
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 6.9e-23 111.3 130 55.4
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 1.2e-22 110.5 99 65.7
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 1.5e-22 110.2 136 52.9
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 1.5e-22 110.2 132 53.0
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 2.6e-22 109.4 129 54.3
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 2.6e-22 109.4 134 49.3
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 3.4e-22 109.0 80 76.2
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 4.5e-22 108.6 132 53.0
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 4.5e-22 108.6 108 59.3
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 5.9e-22 108.2 130 50.8
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 1.3e-21 107.1 133 49.6
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 2.9e-21 105.9 110 55.5
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 5.0e-21 105.1 110 54.5
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 6.5e-21 104.8 130 49.2
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 8.5e-21 104.4 134 49.3
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 1.9e-20 103.2 108 57.4
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 1.9e-20 103.2 130 53.1
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 4.2e-20 102.1 156 45.5
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 5.5e-20 101.7 142 48.6
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 1.2e-19 100.5 130 52.3
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 1.8e-18 96.7 93 58.1
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 3.9e-18 95.5 88 59.1
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 2.6e-17 92.8 127 52.8
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 4.4e-17 92.0 80 65.0
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 9.7e-17 90.9 73 63.0
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 1.3e-16 90.5 134 46.3
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 2.2e-16 89.7 109 54.1
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 6.3e-16 88.2 62 75.8
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 8.2e-16 87.8 108 53.7
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 1.8e-15 86.7 69 76.8
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 3.1e-15 85.9 135 48.1
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 1.0e-13 80.9 108 45.4
A10p02970 Brassica napus HOM05D000117 ORTHO05D001036 1.9e-12 76.6 46 87.0
BolC8t46926H Brassica oleracea HOM05D006603 ORTHO05D007786 1.9e-12 76.6 97 63.9
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 1.9e-12 76.6 140 37.1
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 2.5e-12 76.3 88 52.3
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 4.2e-12 75.5 141 40.4
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 9.4e-12 74.3 88 54.5
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 6.1e-11 71.6 111 44.1
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 8.0e-11 71.2 86 53.5
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 8.0e-11 71.2 142 40.8
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 2.3e-10 69.7 154 35.7
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 3.7e-08 62.4 77 51.9
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 8.2e-08 61.2 113 41.6
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 5.3e-07 58.5 134 33.6
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 5.3e-07 58.5 141 34.0
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 7.0e-07 58.2 140 28.6
CANSAT01G2416 Cannabis sativa HOM05D002103 ORTHO05D004020 5.9e-06 55.1 140 28.6
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 7.7e-06 54.7 141 27.0


User provided reference genes

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