Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 5.1e-137 491.1 254 100.0
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 1.0e-113 413.7 240 88.3
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 7.4e-112 407.5 240 88.3
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 5.9e-109 397.9 241 85.1
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 8.4e-108 394.0 240 85.4
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 3.9e-105 385.2 240 80.4
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 3.7e-103 378.6 241 81.7
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 3.7e-103 378.6 241 81.3
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 2.4e-102 375.9 241 80.9
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 5.3e-102 374.8 241 80.9
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 1.2e-82 310.5 240 67.1
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 6.1e-66 255.0 235 57.0
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 4.4e-64 248.8 231 58.0
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 2.8e-63 246.1 236 55.5
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 7.0e-62 241.5 238 55.0
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 3.5e-61 239.2 239 51.0
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 1.1e-59 234.2 231 51.5
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 3.3e-59 232.6 231 53.2
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 1.2e-56 224.2 231 51.9
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 1.5e-56 223.8 269 46.1
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 1.4e-54 217.2 239 47.7
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 4.1e-54 215.7 159 72.3
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 9.2e-54 214.5 240 49.2
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 2.7e-53 213.0 216 52.3
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 5.0e-52 208.8 240 48.3
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.0e-52 208.8 239 46.9
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 4.3e-51 205.7 239 46.4
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 5.6e-51 205.3 234 47.4
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 1.2e-50 204.1 231 46.3
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 6.2e-50 201.8 249 44.2
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 8.0e-50 201.4 235 44.7
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 1.4e-49 200.7 210 51.9
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 5.2e-49 198.7 236 45.3
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 5.2e-49 198.7 239 49.8
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 8.9e-49 198.0 239 43.5
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 1.2e-48 197.6 231 49.4
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 2.0e-48 196.8 239 43.1
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 3.4e-48 196.1 239 45.2
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 5.8e-48 195.3 213 47.9
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 5.8e-48 195.3 213 47.9
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 9.8e-48 194.5 235 43.4
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 1.3e-47 194.1 233 43.8
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 1.3e-47 194.1 239 42.7
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 1.7e-47 193.7 243 43.6
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 1.7e-47 193.7 236 44.9
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 2.2e-47 193.4 237 43.0
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 2.9e-47 193.0 239 42.3
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 2.9e-47 193.0 236 45.8
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 4.9e-47 192.2 231 43.3
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 4.9e-47 192.2 227 48.5
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 8.3e-47 191.4 243 43.2
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 1.1e-46 191.0 239 46.0
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 1.4e-46 190.7 227 47.1
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 2.4e-46 189.9 239 45.6
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 9.2e-46 188.0 237 45.1
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 1.6e-45 187.2 234 44.4
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 2.0e-45 186.8 237 45.1
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.0e-45 186.8 239 45.6
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 4.6e-45 185.7 239 45.6
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 6.0e-45 185.3 225 43.6
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.3e-44 184.1 224 46.4
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 2.3e-44 183.3 235 43.4
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 3.9e-44 182.6 232 43.5
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 5.0e-44 182.2 245 42.4
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 5.0e-44 182.2 214 46.7
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 1.5e-43 180.6 233 43.3
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 1.9e-43 180.3 235 43.0
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 3.3e-43 179.5 225 44.0
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 1.2e-42 177.6 243 41.6
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 3.6e-42 176.0 233 40.3
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 8.1e-42 174.9 161 61.5
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 8.1e-42 174.9 225 43.6
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 8.1e-42 174.9 214 42.5
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 1.1e-41 174.5 240 38.8
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 4.0e-41 172.6 234 42.7
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 2.6e-40 169.9 248 42.7
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.4e-38 164.1 200 42.0
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 9.2e-38 161.4 248 40.7
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 9.2e-38 161.4 208 40.9
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 9.5e-35 151.4 200 39.5
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 7.6e-32 141.7 207 41.5
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 1.7e-31 140.6 176 39.8
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 1.9e-30 137.1 229 37.1
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 6.0e-29 132.1 242 35.5
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.5e-27 127.5 161 42.9
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 2.5e-27 126.7 228 36.4
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 1.6e-26 124.0 147 42.9
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 1.6e-26 124.0 234 35.5
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 1.8e-25 120.6 149 42.3
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 3.4e-24 116.3 161 40.4
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.3e-23 114.4 145 43.4
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 3.5e-21 106.3 158 35.4
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 3.9e-20 102.8 165 42.4
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 1.2e-16 91.3 229 28.8
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 6.4e-15 85.5 85 51.8
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 8.4e-15 85.1 190 28.4
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 1.3e-10 71.2 67 46.3
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.7e-07 60.8 66 47.0
Glyma.08G171600 Glycine max HOM05D005971 ORTHO05D007459 4.9e-07 59.3 51 58.8


User provided reference genes

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