Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 0.0e+00 1408.7 727 100.0
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 0.0e+00 1311.2 734 91.8
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 0.0e+00 1297.3 733 92.1
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 0.0e+00 1295.4 731 92.9
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 0.0e+00 1280.4 736 89.8
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1247.3 738 88.1
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1235.7 739 87.3
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1235.3 739 87.3
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 0.0e+00 1234.9 739 87.1
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1232.2 742 86.9
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 0.0e+00 1224.2 730 86.2
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 0.0e+00 1210.3 759 84.7
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 0.0e+00 1157.5 751 82.6
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 0.0e+00 1156.0 754 82.6
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 0.0e+00 1154.4 735 81.0
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 0.0e+00 1095.9 614 94.0
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 2.1e-300 1035.4 742 77.1
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 2.7e-292 1008.4 732 71.9
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 6.0e-292 1007.3 731 71.4
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.4e-288 996.1 698 72.9
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.4e-288 996.1 759 69.0
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 5.8e-287 990.7 731 70.0
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 2.9e-286 988.4 725 70.2
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 3.2e-285 984.9 714 71.0
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 4.2e-285 984.6 732 68.6
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 7.1e-285 983.8 729 68.3
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 6.0e-284 980.7 685 74.2
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.3e-281 973.0 699 70.4
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 5.9e-279 964.1 712 69.2
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 1.9e-277 959.1 735 68.3
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.2e-273 945.7 730 67.1
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.8e-272 942.6 706 69.7
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.1e-272 941.4 723 68.7
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 6.9e-272 940.6 727 68.1
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 9.1e-272 940.3 710 67.6
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 1.5e-271 939.5 734 66.3
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 3.4e-271 938.3 717 67.6
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.9e-270 935.3 738 66.3
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.9e-269 932.6 711 67.7
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 4.2e-269 931.4 731 65.8
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.5e-269 931.0 710 66.9
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 7.2e-269 930.6 736 66.3
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 2.7e-268 928.7 735 65.6
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 4.7e-268 927.9 723 66.9
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 3.0e-267 925.2 704 67.3
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 8.8e-267 923.7 731 65.5
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 8.8e-267 923.7 738 65.3
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 7.4e-266 920.6 713 67.3
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 8.2e-265 917.1 731 65.3
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.4e-264 916.4 730 65.5
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 1.8e-264 916.0 728 65.1
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 2.4e-264 915.6 722 67.3
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.0e-262 910.2 756 64.6
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 6.5e-262 907.5 657 71.4
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.1e-261 906.7 725 65.1
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 2.5e-261 905.6 700 68.6
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 9.4e-261 903.7 748 65.2
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 3.0e-259 898.7 739 64.7
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 9.7e-258 893.6 707 65.5
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.1e-256 890.2 725 64.0
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 1.4e-256 889.8 730 63.3
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 2.4e-256 889.0 730 63.8
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 9.1e-256 887.1 725 63.7
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.2e-255 886.7 722 63.2
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 1.2e-255 886.7 708 64.5
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 2.0e-255 885.9 726 64.3
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 3.5e-255 885.2 744 62.8
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 3.5e-255 885.2 702 65.0
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 3.5e-255 885.2 730 62.9
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 7.7e-255 884.0 672 69.0
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.7e-254 882.9 730 63.7
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.7e-254 882.9 724 63.5
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.2e-254 882.5 731 62.9
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 6.5e-254 880.9 723 63.9
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 6.5e-254 880.9 730 63.4
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.9e-253 879.4 721 63.2
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 5.5e-253 877.9 726 64.5
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 5.5e-253 877.9 701 64.1
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 9.4e-253 877.1 705 64.7
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.2e-252 876.7 723 64.9
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.2e-252 876.7 730 62.7
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 2.1e-252 875.9 702 64.5
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.0e-251 873.6 708 63.8
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 6.7e-251 870.9 800 59.8
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 4.4e-250 868.2 684 67.5
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 4.8e-249 864.8 731 62.1
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 1.6e-247 859.8 726 61.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 2.7e-247 859.0 741 61.8
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 5.9e-247 857.8 716 63.7
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 2.2e-246 855.9 724 62.8
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 2.9e-246 855.5 727 63.0
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.7e-244 849.0 728 60.7
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 3.0e-243 845.5 713 62.4
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 4.0e-243 845.1 721 60.7
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 8.8e-243 844.0 683 63.7
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 4.4e-242 841.6 708 61.7
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 4.4e-242 841.6 730 60.0
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 5.7e-242 841.3 730 60.7
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 3.1e-240 835.5 708 61.4
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 2.0e-239 832.8 739 59.4
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 3.8e-238 828.6 732 59.4
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 4.2e-237 825.1 712 61.2
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 9.5e-237 823.9 728 61.5
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 4.7e-236 821.6 709 60.4
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 5.4e-232 808.1 724 59.0
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 7.8e-231 804.3 730 57.4
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 7.8e-231 804.3 682 62.2
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.3e-230 803.5 641 66.0
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.7e-230 803.1 724 59.4
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 3.3e-229 798.9 724 59.3
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 5.2e-227 791.6 720 58.1
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.0e-226 789.6 731 56.9
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 3.4e-226 788.9 705 60.0
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 2.9e-225 785.8 701 59.8
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 4.9e-209 731.9 704 56.0
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.1e-208 730.7 583 67.1
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.2e-207 727.2 708 55.2
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 3.5e-207 725.7 614 64.0
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 2.1e-204 716.5 651 60.4
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 4.9e-201 705.3 713 54.8
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 1.4e-200 703.7 731 52.0
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.0e-190 669.5 548 66.4
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-181 641.0 609 58.8
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.6e-180 637.1 715 50.1
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 9.0e-179 631.3 579 60.3
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 4.2e-176 622.5 673 52.2
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.3e-174 616.7 562 60.7
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 5.1e-174 615.5 725 49.7
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.0e-169 601.3 495 63.8
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.8e-155 553.9 710 45.6
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 4.2e-136 489.6 324 80.2
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 4.0e-134 483.0 332 72.3
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 3.1e-131 473.4 876 37.1
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.5e-130 469.5 612 46.6
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 2.0e-117 427.6 448 55.1
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.2e-103 381.7 256 73.8
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 8.6e-97 359.0 256 71.1
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 4.3e-96 356.7 290 67.9
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.3e-84 318.5 372 48.9
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 2.4e-78 297.7 363 53.2
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 2.1e-71 274.6 327 52.3
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 2.9e-68 264.2 512 36.3
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 2.9e-52 211.1 128 82.0
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 5.0e-52 210.3 546 32.2
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 6.7e-49 199.9 125 80.8
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 6.9e-46 189.9 186 54.3
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.5e-45 187.2 125 70.4
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 2.8e-39 167.9 123 71.5
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 4.2e-35 154.1 138 59.4
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.0e-28 132.9 168 45.2
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 2.9e-28 131.3 178 42.7
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 5.2e-17 94.0 121 45.5
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 3.4e-16 91.3 66 75.8
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 9.1e-14 83.2 54 68.5
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-12 79.3 55 61.8
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.3e-12 79.3 55 61.8
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.9e-11 75.5 87 44.8
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 8.0e-10 70.1 83 43.4
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 1.8e-09 68.9 83 50.6
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.0e-09 67.8 58 60.3
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 5.2e-09 67.4 63 57.1
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.2e-07 62.0 37 81.1


User provided reference genes

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