Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 0.0e+00 1746.1 924 100.0
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 0.0e+00 1580.1 930 90.2
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 0.0e+00 1564.7 930 89.7
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 0.0e+00 1561.6 922 90.1
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 0.0e+00 1548.1 923 88.7
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 0.0e+00 1505.3 920 88.2
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 0.0e+00 1497.3 920 87.7
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 0.0e+00 1490.3 920 87.6
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 0.0e+00 1490.3 920 87.6
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 0.0e+00 1449.5 931 83.2
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 0.0e+00 1334.3 936 76.3
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 0.0e+00 1152.9 697 89.1
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 5.1e-304 1047.7 917 61.7
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 3.9e-296 1021.5 886 61.4
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 1.8e-293 1012.7 929 60.1
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 1.5e-292 1009.6 917 59.8
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 2.0e-292 1009.2 914 60.1
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 2.6e-292 1008.8 918 59.5
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 2.9e-291 1005.4 904 59.5
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 1.4e-290 1003.0 908 59.3
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 6.1e-289 997.7 898 59.8
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 5.7e-287 991.1 901 60.2
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 2.2e-286 989.2 869 60.9
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 3.7e-286 988.4 931 57.5
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 4.8e-286 988.0 875 61.0
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 1.0e-283 980.3 929 57.6
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 8.5e-283 977.2 902 59.6
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 2.5e-282 975.7 895 58.3
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 3.2e-282 975.3 908 58.7
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 3.6e-281 971.8 891 58.9
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 1.4e-280 969.9 937 57.3
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 7.4e-279 964.1 861 59.9
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.3e-278 963.4 928 57.5
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 4.8e-278 961.4 935 57.2
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 6.3e-278 961.1 908 57.4
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 8.2e-278 960.7 925 57.8
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 1.4e-277 959.9 936 57.4
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 2.9e-275 952.2 890 58.0
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 1.1e-274 950.3 888 58.1
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 2.3e-272 942.6 889 56.4
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 1.5e-271 939.9 924 56.4
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 2.0e-271 939.5 891 57.7
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 2.6e-271 939.1 932 56.0
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 5.7e-271 937.9 873 57.0
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 9.7e-271 937.2 924 55.4
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 2.8e-270 935.6 895 57.0
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 1.8e-269 932.9 930 55.9
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 3.1e-269 932.2 867 58.0
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 5.3e-269 931.4 925 55.9
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 2.2e-267 926.0 866 56.7
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 5.0e-267 924.9 931 55.6
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 1.6e-265 919.8 883 55.9
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 1.4e-264 916.8 915 54.3
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 5.2e-264 914.8 918 55.1
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 1.2e-263 913.7 916 55.3
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 4.4e-263 911.8 899 55.6
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 3.7e-262 908.7 894 56.0
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 6.3e-262 907.9 919 55.1
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 3.1e-261 905.6 891 56.8
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 1.2e-260 903.7 862 56.3
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 1.6e-260 903.3 990 52.1
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 1.6e-260 903.3 862 56.0
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.3e-259 899.4 935 54.9
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 1.1e-258 897.1 893 54.4
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 1.4e-256 890.2 930 54.5
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 4.4e-255 885.2 859 55.3
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 4.1e-253 878.6 925 53.9
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 5.9e-252 874.8 923 53.6
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 5.0e-251 871.7 888 54.1
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 6.6e-251 871.3 859 55.3
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 1.1e-250 870.5 864 54.9
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 2.5e-250 869.4 930 53.1
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 9.5e-250 867.5 912 52.5
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 2.8e-249 865.9 806 58.3
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 6.8e-248 861.3 874 54.7
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 3.4e-247 859.0 894 53.4
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 3.4e-247 859.0 863 54.8
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 6.4e-246 854.7 918 52.3
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.0e-244 849.7 776 59.0
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 2.7e-244 849.4 864 53.9
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 7.8e-244 847.8 878 53.5
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 1.5e-239 833.6 814 56.4
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 5.8e-239 831.6 890 52.5
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 2.2e-238 829.7 747 59.6
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 7.8e-236 821.2 929 50.8
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 6.2e-233 811.6 917 51.7
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 4.0e-232 808.9 737 59.7
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 5.2e-232 808.5 931 49.7
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 1.2e-231 807.4 877 51.4
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 5.8e-223 778.5 910 48.6
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 5.1e-219 765.4 801 51.4
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 1.6e-212 743.8 792 53.7
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 3.5e-212 742.7 874 50.3
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 4.6e-212 742.3 888 48.2
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 1.7e-206 723.8 655 60.0
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 7.6e-191 671.8 569 62.2
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 3.1e-184 649.8 614 55.5
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 2.1e-180 637.1 891 41.6
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 2.0e-178 630.6 874 42.6
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 6.9e-176 622.1 551 59.0
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 6.7e-171 605.5 904 39.7
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 2.2e-169 600.5 932 39.8
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 8.8e-163 578.6 711 48.1
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 2.6e-154 550.4 801 44.8
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 7.2e-149 532.3 477 57.0
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 2.0e-146 524.2 858 38.9
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 1.1e-128 465.3 473 55.0
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 1.1e-107 395.6 952 32.4
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 4.4e-106 390.2 917 32.6
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 3.6e-100 370.5 313 63.9
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 4.0e-99 367.1 396 54.8
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.4e-96 358.6 402 53.2
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 5.4e-96 356.7 289 65.1
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 3.6e-92 344.0 994 27.3
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.9e-89 334.3 349 52.1
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 3.8e-81 307.4 268 60.8
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 3.2e-80 304.3 677 32.9
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 8.7e-78 296.2 451 43.5
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 1.1e-77 295.8 325 53.8
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 4.1e-67 260.8 256 56.2
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.6e-63 248.8 452 40.0
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.0e-58 231.9 180 65.6
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 5.1e-54 217.2 218 52.8
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 1.7e-52 212.2 384 40.4
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.6e-47 194.5 377 38.2
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 1.4e-46 192.6 164 58.5
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.1e-43 183.0 193 49.2
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.9e-40 172.2 177 50.3
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.4e-40 169.9 265 37.0
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 1.6e-39 169.1 132 68.2
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 5.0e-33 147.5 137 54.0
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 2.0e-29 135.6 158 54.4
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 7.5e-29 133.7 97 73.2
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 4.1e-27 127.9 129 53.5
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 3.6e-23 114.8 170 44.7
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 2.6e-21 108.6 97 56.7
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.7e-17 95.9 95 57.9
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 7.3e-16 90.5 92 55.4
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 1.6e-15 89.4 168 36.9
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 6.2e-15 87.4 63 71.4
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 1.4e-14 86.3 119 47.1
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.7e-12 79.3 48 75.0
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 1.4e-11 76.3 68 57.4
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.2e-10 73.2 153 29.4
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 5.0e-09 67.8 58 58.6
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 6.6e-09 67.4 112 39.3


User provided reference genes

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