Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 2.2e-166 589.0 314 100.0
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 9.7e-146 520.4 314 82.5
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 5.3e-144 514.6 314 81.8
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 9.0e-144 513.8 314 81.2
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 1.2e-143 513.5 314 81.5
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 4.2e-141 505.0 314 82.5
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 7.2e-141 504.2 314 80.3
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 9.4e-141 503.8 314 81.5
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 3.1e-136 488.8 318 83.3
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 9.4e-133 477.2 314 83.8
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 3.6e-132 475.3 314 83.1
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 1.9e-125 453.0 311 77.8
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 2.1e-116 422.9 312 66.3
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 7.8e-87 324.7 303 54.1
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 1.0e-86 324.3 299 54.2
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 2.3e-86 323.2 310 52.9
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 1.5e-85 320.5 300 54.7
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 3.3e-85 319.3 306 53.9
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 7.3e-85 318.2 295 54.2
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 1.2e-84 317.4 296 54.4
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 1.8e-83 313.5 310 53.2
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 3.1e-83 312.8 295 53.2
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 3.4e-82 309.3 306 51.6
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 4.4e-82 308.9 290 54.5
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 9.8e-82 307.8 299 52.5
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 2.2e-81 306.6 299 52.8
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 2.9e-81 306.2 295 52.5
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 1.1e-80 304.3 295 51.9
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 1.1e-80 304.3 299 52.2
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 1.4e-80 303.9 286 52.8
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 3.2e-80 302.8 292 52.1
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 5.4e-80 302.0 298 54.4
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.1e-79 300.1 290 52.4
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 2.1e-79 300.1 300 52.0
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 2.1e-79 300.1 302 49.7
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 2.7e-79 299.7 296 51.4
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.5e-79 299.3 290 52.4
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 3.5e-79 299.3 296 51.7
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.0e-79 298.5 304 50.3
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.0e-79 298.5 304 50.3
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 1.0e-78 297.7 312 50.3
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 2.3e-78 296.6 308 49.7
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 1.9e-77 293.5 296 50.7
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 2.5e-77 293.1 287 51.9
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.2e-76 290.8 278 52.9
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 3.4e-74 282.7 296 50.0
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 4.9e-73 278.9 295 47.5
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 6.4e-73 278.5 279 51.3
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 1.9e-72 276.9 281 50.2
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 2.4e-72 276.6 285 47.0
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.1e-69 267.7 226 57.1
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.1e-69 267.7 225 58.2
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 7.3e-69 265.0 279 52.0
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 1.6e-68 263.8 289 47.4
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 3.6e-68 262.7 289 47.1
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 4.7e-68 262.3 278 50.4
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 1.8e-67 260.4 292 46.9
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 3.1e-67 259.6 286 47.9
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 3.1e-67 259.6 288 46.9
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 9.9e-66 254.6 218 58.7
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 1.3e-65 254.2 286 48.3
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 3.5e-63 246.1 220 55.9
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 1.6e-60 237.3 281 45.9
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 3.6e-60 236.1 208 58.2
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 2.6e-58 229.9 335 40.3
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 9.9e-58 228.0 307 42.3
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 1.7e-57 227.3 294 42.2
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 3.8e-57 226.1 315 43.2
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 6.4e-57 225.3 250 43.2
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 9.3e-56 221.5 250 43.2
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 1.3e-54 217.6 307 38.4
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 1.9e-53 213.8 251 42.6
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 5.6e-53 212.2 296 40.5
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 4.0e-51 206.1 206 52.4
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 2.0e-50 203.8 186 56.5
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 3.4e-50 203.0 186 56.5
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 7.6e-50 201.8 186 55.9
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 1.3e-49 201.1 198 51.0
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 1.4e-48 197.6 143 67.8
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 1.0e-46 191.4 192 51.6
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 1.2e-26 124.8 149 41.6
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 3.2e-16 90.1 135 41.5
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 1.4e-11 74.7 188 28.7


User provided reference genes

Program Settings