Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR000970 Cardamine hirsuta HOM05D005178 ORTHO05D006123 7.0e-145 517.3 268 100.0
AL1G10980 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 1.2e-117 426.8 268 82.5
Carub.0001s0080 Capsella rubella HOM05D005178 ORTHO05D006123 2.2e-106 389.4 274 77.4
Thhalv10009686m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 3.2e-105 385.6 265 77.0
AT1G01453 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 1.3e-103 380.2 272 75.4
C05p00550 Brassica napus HOM05D005178 ORTHO05D006123 8.6e-103 377.5 273 74.0
BcaB03g13583 Brassica carinata HOM05D005178 ORTHO05D006123 1.9e-102 376.3 273 73.6
A10p00520 Brassica napus HOM05D005178 ORTHO05D006123 2.4e-100 369.4 270 73.0
BraA10t42331Z Brassica rapa HOM05D005178 ORTHO05D006123 4.0e-100 368.6 270 73.0
Sp1g00860 Schrenkiella parvula HOM05D005178 ORTHO05D006123 4.0e-100 368.6 268 74.6
BolC5t28844H Brassica oleracea HOM05D005178 ORTHO05D006123 6.8e-100 367.9 267 73.0
Thhalv10028895m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 3.5e-88 328.9 259 66.4
CARHR249180 Cardamine hirsuta HOM05D005178 ORTHO05D006123 5.6e-86 321.6 260 65.0
Aa31LG5G850 Aethionema arabicum HOM05D005178 ORTHO05D006123 6.9e-84 314.7 271 60.5
AL6G52250 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 9.9e-83 310.8 260 64.6
AT4G01110 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 2.9e-82 309.3 262 63.4
A03p31890 Brassica napus HOM05D005178 ORTHO05D006123 8.4e-82 307.8 255 65.5
C03p38880 Brassica napus HOM05D005178 ORTHO05D006123 8.4e-82 307.8 251 65.7
BolC3t16162H Brassica oleracea HOM05D005178 ORTHO05D006123 1.4e-81 307.0 251 65.7
BraA02t07418Z Brassica rapa HOM05D005178 ORTHO05D006123 1.4e-81 307.0 254 63.0
BcaC01g06846 Brassica carinata HOM05D005178 ORTHO05D006123 1.2e-80 303.9 257 65.0
BcaB01g02336 Brassica carinata HOM05D005178 ORTHO05D006123 1.6e-80 303.5 257 63.4
Aa31LG1G10830 Aethionema arabicum HOM05D005178 ORTHO05D006123 8.7e-79 297.7 256 63.7
Carub.0006s3617 Capsella rubella HOM05D005178 ORTHO05D006123 1.1e-78 297.4 264 61.4
C02p38280 Brassica napus HOM05D005178 ORTHO05D006123 4.3e-78 295.4 254 60.6
BcaC03g16062 Brassica carinata HOM05D005178 ORTHO05D006123 3.7e-77 292.4 254 60.2
THA.LOC104825868 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 3.1e-76 289.3 268 59.3
BolC2t09843H Brassica oleracea HOM05D005178 ORTHO05D006123 4.0e-76 288.9 254 59.4
Sp6g01000 Schrenkiella parvula HOM05D005178 ORTHO05D006123 5.8e-75 285.0 260 59.2
BraA03t12361Z Brassica rapa HOM05D005178 ORTHO05D006123 5.6e-70 268.5 250 59.6
A02p24280 Brassica napus HOM05D005178 ORTHO05D006123 1.5e-67 260.4 248 57.7
Gohir.D12G113800 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.7e-42 177.2 248 41.5
Gorai.008G123300 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.4e-41 174.1 248 41.5
C03p30470 Brassica napus HOM05D005178 ORTHO05D006123 3.3e-38 162.9 249 41.8
BolC3t15395H Brassica oleracea HOM05D005178 ORTHO05D006123 3.3e-38 162.9 249 41.8
AL4G45600 Arabidopsis lyrata HOM05D005178 ORTHO05D006123 9.7e-38 161.4 255 38.8
A05p01500 Brassica napus HOM05D005178 ORTHO05D006123 9.7e-38 161.4 258 39.5
BraA05t19146Z Brassica rapa HOM05D005178 ORTHO05D006123 9.7e-38 161.4 258 39.5
Thhalv10001596m.g Eutrema salsugineum HOM05D005178 ORTHO05D006123 2.2e-37 160.2 258 38.0
BcaC02g12521 Brassica carinata HOM05D005178 ORTHO05D006123 2.8e-37 159.8 262 38.9
Gohir.A11G094200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 4.8e-37 159.1 251 41.0
Gohir.D11G099200 Gossypium hirsutum HOM05D005178 ORTHO05D006123 6.3e-37 158.7 251 40.6
Aa31LG1G27670 Aethionema arabicum HOM05D005178 ORTHO05D006123 2.4e-36 156.8 239 37.7
C04p01700 Brassica napus HOM05D005178 ORTHO05D006123 2.4e-36 156.8 258 39.1
BolC4t21822H Brassica oleracea HOM05D005178 ORTHO05D006123 2.4e-36 156.8 258 39.1
BcaC01g05079 Brassica carinata HOM05D005178 ORTHO05D006123 1.2e-35 154.5 256 39.8
Gorai.007G105400 Gossypium raimondii HOM05D005178 ORTHO05D006123 1.6e-35 154.1 251 39.8
AT2G46300 Arabidopsis thaliana HOM05D005178 ORTHO05D006123 5.9e-35 152.1 254 37.4
Nn7g37376 Nelumbo nucifera HOM05D005178 ORTHO05D006123 7.7e-35 151.8 252 40.1
Thecc.01G348100 Theobroma cacao HOM05D005178 ORTHO05D006123 1.3e-34 151.0 250 40.4
Carub.0004s2900 Capsella rubella HOM05D005178 ORTHO05D006123 3.8e-34 149.4 257 37.0
Manes.05G026400 Manihot esculenta HOM05D005178 ORTHO05D006123 4.2e-33 146.0 247 36.8
BcaB01g03231 Brassica carinata HOM05D005178 ORTHO05D006123 1.2e-32 144.4 253 37.2
BcaC01g05085 Brassica carinata HOM05D005178 ORTHO05D006123 1.2e-32 144.4 253 37.2
CANSAT56G4005 Cannabis sativa HOM05D005178 ORTHO05D006123 3.6e-32 142.9 251 38.6
Potri.014G094400 Populus trichocarpa HOM05D005178 ORTHO05D006123 1.8e-31 140.6 255 35.3
THA.LOC104802056 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 1.8e-31 140.6 244 37.7
Potri.002G167300 Populus trichocarpa HOM05D005178 ORTHO05D006123 3.0e-31 139.8 255 36.5
Gohir.D08G147400 Gossypium hirsutum HOM05D005178 ORTHO05D006123 4.0e-31 139.4 251 35.1
A03p25540 Brassica napus HOM05D005178 ORTHO05D006123 5.2e-31 139.0 249 37.8
BraA03t11771Z Brassica rapa HOM05D005178 ORTHO05D006123 5.2e-31 139.0 249 37.8
CARHR141580 Cardamine hirsuta HOM05D005178 ORTHO05D006123 6.8e-31 138.7 253 35.2
Ciclev10021837m.g Citrus clementina HOM05D005178 ORTHO05D006123 1.2e-30 137.9 265 38.5
CsaV3_3G008390 Cucumis sativus L. HOM05D000050 ORTHO05D000380 1.2e-30 137.9 260 38.5
Gorai.004G153000 Gossypium raimondii HOM05D005178 ORTHO05D006123 2.0e-30 137.1 251 34.7
QL04p059571 Quercus lobata HOM05D005178 ORTHO05D006123 2.6e-30 136.7 257 39.7
Sabra02G0144400 Salix brachista HOM05D005178 ORTHO05D006123 2.6e-30 136.7 251 34.7
Duzib133G0451 Durio zibethinus HOM05D005178 ORTHO05D006123 7.5e-30 135.2 252 37.7
Duzib138G0021 Durio zibethinus HOM05D005178 ORTHO05D006123 1.7e-29 134.0 251 36.7
FAN10G2759 Fragaria x ananassa HOM05D005178 ORTHO05D006123 2.8e-29 133.3 258 35.7
Nn1g01788 Nelumbo nucifera HOM05D005178 ORTHO05D006123 2.8e-29 133.3 246 35.4
Haze_15614 Corylus avellana HOM05D005178 ORTHO05D006123 4.8e-29 132.5 247 39.7
Gohir.A08G126100 Gossypium hirsutum HOM05D005178 ORTHO05D006123 1.1e-28 131.3 244 34.4
PGR042G2135 Punica granatum HOM05D005178 ORTHO05D006123 1.1e-28 131.3 258 36.8
FvH4_7g15840 Fragaria vesca HOM05D005178 ORTHO05D006123 1.4e-28 131.0 256 36.7
MELO3C006056.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.8e-28 130.6 255 38.0
FAN06G0749 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.8e-28 130.6 256 36.7
FAN03G0560 Fragaria x ananassa HOM05D005178 ORTHO05D006123 7.0e-28 128.6 253 35.6
RcHm_v2.0_Chr1g0358651 Rosa chinensis HOM05D005178 ORTHO05D006123 2.7e-27 126.7 253 35.6
Sp4g28340 Schrenkiella parvula HOM05D005178 ORTHO05D006123 2.7e-27 126.7 259 33.6
MD07G1144100 Malus domestica HOM05D005178 ORTHO05D006123 3.5e-27 126.3 256 35.2
THA.LOC104817334 Tarenaya hassleriana HOM05D005178 ORTHO05D006123 3.5e-27 126.3 246 34.1
FAN06G4203 Fragaria x ananassa HOM05D005178 ORTHO05D006123 1.7e-26 124.0 252 36.1
Atru.chr5.616 Acer truncatum HOM05D005178 ORTHO05D006123 2.2e-26 123.6 247 36.0
FAN10G1950 Fragaria x ananassa HOM05D005178 ORTHO05D006123 6.5e-26 122.1 251 35.1
Sc01g0002990 Simmondsia chinensis HOM05D005178 ORTHO05D006123 1.9e-25 120.6 250 35.2
CiPaw.01G071600 Carya illinoinensis HOM05D005178 ORTHO05D006123 4.2e-25 119.4 255 36.1
TWI14G0215 Tripterygium wilfordii HOM05D005178 ORTHO05D006123 1.0e-23 114.8 141 44.7
Sed0008780 Sechium edule HOM05D005178 ORTHO05D006123 2.3e-23 113.6 245 33.5
MD01G1075000 Malus domestica HOM05D005178 ORTHO05D006123 8.8e-23 111.7 261 33.3
Hma1.2p1_2972F.1_g331100 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 2.0e-22 110.5 244 33.2
Gohir.A12G110633 Gossypium hirsutum HOM05D005178 ORTHO05D006123 3.4e-22 109.8 144 43.1
ClCG08G003840 Citrullus lanatus HOM05D005178 ORTHO05D006123 7.5e-22 108.6 257 33.5
SHI13195 Sapria himalayana HOM05D005178 ORTHO05D006123 1.7e-21 107.5 245 32.7
Prupe.2G183000 Prunus persica HOM05D005178 ORTHO05D006123 6.3e-21 105.5 257 31.5
Dinv32550 Davidia involucrata HOM05D005178 ORTHO05D006123 8.3e-21 105.1 246 32.5
Hma1.2p1_0384F.1_g141000 Hydrangea macrophylla HOM05D005178 ORTHO05D006123 1.6e-19 100.9 244 33.2
CiPaw.02G038200 Carya illinoinensis HOM05D005178 ORTHO05D006123 2.7e-19 100.1 254 33.1
Sed0006216 Sechium edule HOM05D005178 ORTHO05D006123 4.5e-19 99.4 229 32.3
MBI06_g02230_MAGBIO Magnolia biondii HOM05D005178 ORTHO05D006123 5.9e-19 99.0 246 32.9
Nitab4.5_0005619g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 7.7e-19 98.6 251 31.5
Sopen10g005540 Solanum pennellii HOM05D005178 ORTHO05D006123 2.9e-18 96.7 244 32.4
HPP92_005223 Vanilla planifolia HOM05D005178 ORTHO05D006123 2.9e-18 96.7 258 29.8
Rhsim07G0007300 Rhododendron simsii HOM05D005178 ORTHO05D006123 6.6e-18 95.5 250 32.4
Sabra14G0069000 Salix brachista HOM05D005178 ORTHO05D006123 8.6e-18 95.1 150 35.3
Lj7A504T56 Lonicera japonica HOM05D005178 ORTHO05D006123 2.5e-17 93.6 243 30.5
Solyc10g011750.3 Solanum lycopersicum HOM05D005178 ORTHO05D006123 2.5e-17 93.6 241 32.0
Aqoxy7G00174 Aquilegia oxysepala HOM05D005178 ORTHO05D006123 3.3e-17 93.2 258 28.7
Dinv43890 Davidia involucrata HOM05D005178 ORTHO05D006123 5.5e-17 92.4 252 31.3
CAN.G1651.2 Capsicum annuum HOM05D005178 ORTHO05D006123 7.2e-17 92.0 251 30.3
Phvul.006G110000 Phaseolus vulgaris HOM05D005178 ORTHO05D006123 1.2e-16 91.3 269 30.9
Sed0019896 Sechium edule HOM05D005178 ORTHO05D006123 3.6e-16 89.7 257 31.5
Peaxi162Scf00099g00191 Petunia axillaris HOM05D005178 ORTHO05D006123 4.7e-16 89.4 259 31.7
SalBow5G4166 Salvia bowleyana HOM05D005178 ORTHO05D006123 6.1e-16 89.0 175 33.7
Nitab4.5_0000522g0010 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.4e-15 87.8 230 32.2
Nitab4.5_0002262g0140 Nicotiana tabacum HOM05D005178 ORTHO05D006123 1.8e-15 87.4 252 31.3
PGSC0003DMG400019400 Solanum tuberosum HOM05D005178 ORTHO05D006123 1.8e-15 87.4 244 31.1
SGA_v2.0_scaffold11G05717 Striga asiatica HOM05D005178 ORTHO05D006123 1.8e-15 87.4 240 30.4
PSO384G3117 Papaver somniferum HOM05D005178 ORTHO05D006123 4.0e-15 86.3 249 30.5
CsaV3_6G003970 Cucumis sativus L. HOM05D005178 ORTHO05D006123 1.5e-14 84.3 260 29.2
PSO135G0875 Papaver somniferum HOM05D005178 ORTHO05D006123 1.5e-14 84.3 249 30.1
Medtr7g116930 Medicago truncatula HOM05D005178 ORTHO05D006123 2.6e-14 83.6 181 30.4
Ca_09491_v3 Cicer arietinum L. HOM05D005178 ORTHO05D006123 4.4e-14 82.8 249 29.3
Peaxi162Scf00403g00074 Petunia axillaris HOM05D005178 ORTHO05D006123 4.4e-14 82.8 255 30.6
CSS0038689 Camellia sinensis var. sinensis HOM05D005178 ORTHO05D006123 5.7e-14 82.4 246 31.3
Nitab4.5_0003779g0030 Nicotiana tabacum HOM05D005178 ORTHO05D006123 9.8e-14 81.6 250 32.8
BcaC01g05083 Brassica carinata HOM05D005178 ORTHO05D006123 2.2e-13 80.5 101 40.6
MELO3C029922.2 Cucumis melo HOM05D005178 ORTHO05D006123 1.4e-12 77.8 254 28.3
CAN.G449.55 Capsicum annuum HOM05D002137 ORTHO05D002144 2.4e-12 77.0 251 27.5
Glyma.19G252900 Glycine max HOM05D005178 ORTHO05D006123 1.3e-10 71.2 255 27.1
PGR102G2531 Punica granatum HOM05D002137 ORTHO05D002144 1.3e-10 71.2 248 24.6
Actinidia10100 Actinidia chinensis HOM05D005178 ORTHO05D006123 1.7e-10 70.9 246 26.8
Thhalv10008522m.g Eutrema salsugineum HOM05D002137 ORTHO05D002144 1.7e-10 70.9 180 27.2
MSTRG.11657 Avicennia marina HOM05D002137 ORTHO05D002144 2.3e-10 70.5 244 26.6
Glyma.03G255300 Glycine max HOM05D005178 ORTHO05D006123 5.0e-10 69.3 247 27.1
Oeu008679.1 Olea europaea HOM05D005178 ORTHO05D006123 5.0e-10 69.3 171 28.7
TAR375G0073 Trochodendron aralioides HOM05D005178 ORTHO05D006123 5.0e-10 69.3 102 38.2
TAR633G1539 Trochodendron aralioides HOM05D000050 ORTHO05D010482 5.0e-10 69.3 254 28.3
BcaB06g28372 Brassica carinata HOM05D008517 ORTHO05D010482 1.1e-09 68.2 188 30.9
Lalb_Chr04g0261721 Lupinus albus HOM05D005178 ORTHO05D006123 1.1e-09 68.2 180 28.9
Thhalv10016822m.g Eutrema salsugineum HOM05D008517 ORTHO05D010482 3.3e-09 66.6 271 26.9
MSTRG.25949 Avicennia marina HOM05D002137 ORTHO05D002144 4.3e-09 66.2 202 26.7
BcaC02g11142 Brassica carinata HOM05D008517 ORTHO05D010482 4.3e-09 66.2 208 29.8
C04p20010 Brassica napus HOM05D008517 ORTHO05D010482 4.3e-09 66.2 208 29.8
BolC4t23540H Brassica oleracea HOM05D008517 ORTHO05D010482 4.3e-09 66.2 208 29.8
AUR62004447 Chenopodium quinoa HOM05D005178 ORTHO05D006123 9.5e-09 65.1 121 33.1
A05p14960 Brassica napus HOM05D008517 ORTHO05D010482 1.2e-08 64.7 208 29.3
BraA05t20422Z Brassica rapa HOM05D008517 ORTHO05D010482 1.2e-08 64.7 208 29.3
vmacro13200 Vaccinium macrocarpon HOM05D005178 ORTHO05D006123 1.6e-08 64.3 206 30.6
AUR62023503 Chenopodium quinoa HOM05D005178 ORTHO05D006123 2.1e-08 63.9 121 32.2
MELO3C020481.2 Cucumis melo HOM05D008517 ORTHO05D010482 2.1e-08 63.9 213 26.8
Sp4g13060 Schrenkiella parvula HOM05D008517 ORTHO05D010482 2.1e-08 63.9 266 26.3
BraA04t17851Z Brassica rapa HOM05D008517 ORTHO05D010482 2.8e-08 63.5 247 26.3
Migut.A00132 Erythranthe guttata HOM05D002137 ORTHO05D002144 2.8e-08 63.5 278 25.2
A04p23240 Brassica napus HOM05D008517 ORTHO05D010482 3.6e-08 63.2 247 26.3
BcaB02g10328 Brassica carinata HOM05D008517 ORTHO05D010482 4.7e-08 62.8 209 28.2
Nitab4.5_0001295g0090 Nicotiana tabacum HOM05D002137 ORTHO05D002144 4.7e-08 62.8 160 27.5
BcaC02g08016 Brassica carinata HOM05D008517 ORTHO05D010482 6.1e-08 62.4 247 25.9
C04p59390 Brassica napus HOM05D008517 ORTHO05D010482 6.1e-08 62.4 247 25.9
BolC4t27447H Brassica oleracea HOM05D008517 ORTHO05D010482 6.1e-08 62.4 247 25.9
CiPaw.02G139800 Carya illinoinensis HOM05D002137 ORTHO05D002144 8.0e-08 62.0 232 26.7
Cpa.g.sc2.275 Carica papaya HOM05D008517 ORTHO05D010482 1.0e-07 61.6 199 28.6
Manes.04G139900 Manihot esculenta HOM05D002137 ORTHO05D002144 1.0e-07 61.6 189 26.5
Manes.02G211300 Manihot esculenta HOM05D008517 ORTHO05D010482 1.4e-07 61.2 163 26.4
BcaC01g05087 Brassica carinata HOM05D001597 ORTHO05D001512 1.8e-07 60.8 175 29.7
Nitab4.5_0010788g0030 Nicotiana tabacum HOM05D002137 ORTHO05D002144 1.8e-07 60.8 164 26.8
unitig_0.g2874 Utricularia gibba HOM05D002137 ORTHO05D002144 1.8e-07 60.8 231 27.3
Duzib192G0186 Durio zibethinus HOM05D002137 ORTHO05D002144 3.1e-07 60.1 241 25.7
Manes.11G026200 Manihot esculenta HOM05D002137 ORTHO05D002144 5.2e-07 59.3 189 27.0
PSO170G1620 Papaver somniferum HOM05D008517 ORTHO05D010482 6.8e-07 58.9 156 31.4
THA.LOC104812217 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 8.9e-07 58.5 250 26.8
THA.LOC104813947 Tarenaya hassleriana HOM05D002137 ORTHO05D002144 8.9e-07 58.5 154 27.9
CSS0025872 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 1.5e-06 57.8 159 27.0
Potri.001G200700 Populus trichocarpa HOM05D002137 ORTHO05D002144 1.5e-06 57.8 258 26.4
CAN.G1389.23 Capsicum annuum HOM05D002137 ORTHO05D002144 3.4e-06 56.6 167 24.6
Lalb_Chr18g0054121 Lupinus albus HOM05D008517 ORTHO05D010482 3.4e-06 56.6 209 24.9
Thhalv10002076m.g Eutrema salsugineum HOM05D002687 ORTHO05D002052 4.4e-06 56.2 137 29.2
Os01g0574800 Oryza sativa ssp. japonica HOM05D002137 ORTHO05D002144 5.8e-06 55.8 158 31.0
Zm00001eb357160 Zea mays HOM05D002137 ORTHO05D002144 5.8e-06 55.8 174 27.0


User provided reference genes

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