Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 7.4e-74 280.4 138 100.0
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 2.7e-44 182.2 137 67.2
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 1.4e-43 179.9 136 66.9
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.8e-43 179.5 137 65.0
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 5.2e-43 177.9 120 74.2
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 1.2e-42 176.8 133 65.4
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 2.2e-41 172.6 123 69.9
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 3.7e-41 171.8 124 67.7
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 1.1e-40 170.2 117 70.1
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 1.4e-40 169.9 114 71.9
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.8e-40 169.5 112 71.4
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 4.1e-40 168.3 126 65.1
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 5.4e-40 167.9 132 62.1
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 5.4e-40 167.9 126 68.3
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 7.0e-40 167.5 125 64.0
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 9.1e-40 167.2 115 70.4
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.2e-39 166.8 124 64.5
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 1.6e-39 166.4 119 69.7
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 1.6e-39 166.4 117 69.2
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 2.0e-39 166.0 125 68.0
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 2.7e-39 165.6 113 69.9
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.5e-39 165.2 126 65.9
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 4.5e-39 164.9 148 57.4
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 1.0e-38 163.7 114 70.2
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.3e-38 163.3 139 60.4
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.3e-38 163.3 126 65.1
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.2e-38 162.5 126 64.3
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.2e-38 162.5 126 64.3
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.2e-38 162.5 126 64.3
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.2e-38 162.5 126 64.3
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.9e-38 162.2 126 64.3
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 2.9e-38 162.2 126 63.5
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 6.5e-38 161.0 131 61.8
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 6.5e-38 161.0 126 63.5
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 1.5e-37 159.8 131 61.8
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.9e-37 159.5 126 63.5
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 2.5e-37 159.1 122 63.1
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 4.2e-37 158.3 125 66.4
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 9.4e-37 157.1 123 63.4
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 1.6e-36 156.4 135 57.8
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.6e-36 156.4 123 62.6
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 2.1e-36 156.0 121 65.3
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 2.1e-36 156.0 106 70.8
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 2.7e-36 155.6 131 61.8
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.7e-36 155.6 133 60.9
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 2.7e-36 155.6 129 58.9
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 3.6e-36 155.2 123 64.2
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.7e-36 154.8 125 60.0
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.1e-36 154.5 125 60.8
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.1e-36 154.5 125 60.0
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 6.1e-36 154.5 131 61.8
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 6.1e-36 154.5 134 58.2
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 1.8e-35 152.9 125 59.2
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 2.3e-35 152.5 121 61.2
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.0e-35 152.1 125 59.2
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 4.0e-35 151.8 124 61.3
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 6.8e-35 151.0 122 62.3
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 6.8e-35 151.0 137 60.6
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 8.8e-35 150.6 126 58.7
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 1.2e-34 150.2 121 61.2
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 3.4e-34 148.7 134 58.2
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 3.4e-34 148.7 126 61.1
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 5.7e-34 147.9 121 59.5
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 9.8e-34 147.1 104 66.3
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 9.8e-34 147.1 123 61.0
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.3e-33 146.7 141 56.7
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 3.7e-33 145.2 124 60.5
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 4.9e-33 144.8 158 50.6
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 8.3e-33 144.1 122 61.5
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 3.1e-32 142.1 113 61.9
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 7.0e-32 141.0 168 47.0
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 1.2e-31 140.2 121 59.5
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 3.5e-31 138.7 123 58.5
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 1.3e-30 136.7 146 54.1
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 1.7e-30 136.3 136 57.4
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 8.6e-30 134.0 128 56.2
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 9.5e-29 130.6 139 49.6
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 9.5e-29 130.6 139 49.6
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 1.6e-28 129.8 121 56.2
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 4.0e-27 125.2 85 68.2
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 1.3e-25 120.2 126 52.4
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.7e-25 119.8 123 53.7
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 2.9e-25 119.0 127 53.5
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 3.7e-25 118.6 225 35.1
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 4.9e-25 118.2 89 61.8
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 8.3e-25 117.5 141 51.8
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 9.2e-24 114.0 68 73.5
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 9.2e-24 114.0 116 53.4
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.2e-23 113.6 82 64.6
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 3.5e-23 112.1 124 47.6
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 3.5e-23 112.1 127 48.8
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 4.6e-23 111.7 124 48.4
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 4.6e-23 111.7 111 53.2
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 1.7e-22 109.8 112 51.8
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 2.9e-22 109.0 122 50.8
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 3.9e-22 108.6 123 48.8
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 3.9e-22 108.6 116 52.6
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 6.6e-22 107.8 116 50.9
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.6e-22 107.8 81 60.5
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 2.5e-21 105.9 116 50.0
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 3.3e-21 105.5 123 48.0
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 4.3e-21 105.1 112 53.6
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 5.6e-21 104.8 94 55.3
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 9.5e-21 104.0 100 54.0
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 1.2e-20 103.6 123 45.5
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 1.6e-20 103.2 112 46.4
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 2.1e-20 102.8 113 53.1
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 4.7e-20 101.7 105 50.5
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 6.1e-20 101.3 112 46.4
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 6.1e-20 101.3 118 44.1
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.4e-19 100.1 123 46.3
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 2.3e-19 99.4 68 69.1
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 3.1e-19 99.0 103 51.5
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 6.8e-19 97.8 120 47.5
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 1.5e-18 96.7 66 66.7
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 4.4e-18 95.1 113 47.8
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 5.8e-18 94.7 123 45.5
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 7.5e-18 94.4 135 41.5
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.1e-16 90.5 115 46.1
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 1.4e-16 90.1 86 59.3
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 5.4e-16 88.2 126 43.7
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.6e-15 85.1 65 58.5
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 5.0e-14 81.6 89 47.2
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 8.6e-14 80.9 107 42.1
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 1.1e-13 80.5 60 60.0
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 4.3e-13 78.6 121 39.7
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 6.2e-12 74.7 62 64.5
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 5.2e-11 71.6 85 45.9
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 2.0e-10 69.7 60 56.7
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 1.1e-08 63.9 50 70.0
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 1.1e-08 63.9 57 52.6
RcHm_v2.0_Chr5g0034431 Rosa chinensis HOM05D005439 ORTHO05D006793 1.4e-08 63.5 50 54.0
FAN09G3549 Fragaria x ananassa HOM05D005439 ORTHO05D006793 5.4e-08 61.6 57 52.6
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 7.1e-08 61.2 57 61.4
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 9.2e-08 60.8 57 61.4
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 3.9e-06 55.5 45 62.2


User provided reference genes

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