Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 2.2e-81 305.4 144 100.0
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 6.8e-54 214.2 118 88.1
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 5.0e-49 198.0 115 84.3
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 1.1e-48 196.8 118 79.7
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 2.0e-45 186.0 118 71.2
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 2.0e-45 186.0 118 70.3
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 2.6e-45 185.7 118 72.0
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 4.4e-45 184.9 118 74.6
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 7.5e-45 184.1 118 70.3
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 1.3e-44 183.3 118 71.2
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 2.9e-44 182.2 118 72.9
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 2.9e-44 182.2 118 72.0
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 2.9e-44 182.2 123 69.1
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 3.7e-44 181.8 118 70.3
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 4.9e-44 181.4 118 72.0
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 6.4e-44 181.0 118 69.5
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 6.4e-44 181.0 118 72.0
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 8.3e-44 180.6 118 70.3
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 8.3e-44 180.6 118 71.2
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 8.3e-44 180.6 118 66.9
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 1.1e-43 180.3 118 70.3
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 1.4e-43 179.9 118 71.2
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 1.4e-43 179.9 118 71.2
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 1.9e-43 179.5 118 69.5
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 1.9e-43 179.5 118 70.3
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 2.4e-43 179.1 118 70.3
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 2.4e-43 179.1 118 70.3
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 2.4e-43 179.1 118 69.5
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 3.2e-43 178.7 118 72.0
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 3.2e-43 178.7 118 71.2
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 3.2e-43 178.7 118 68.6
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 3.2e-43 178.7 118 70.3
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 3.2e-43 178.7 118 69.5
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 4.1e-43 178.3 118 68.6
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 5.4e-43 177.9 118 69.5
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 5.4e-43 177.9 118 70.3
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 7.0e-43 177.6 118 66.1
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 7.0e-43 177.6 118 68.6
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 9.2e-43 177.2 118 66.1
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 9.2e-43 177.2 118 71.2
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 9.2e-43 177.2 118 69.5
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 9.2e-43 177.2 118 68.6
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 1.2e-42 176.8 118 68.6
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.2e-42 176.8 118 68.6
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 1.2e-42 176.8 119 70.6
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 1.2e-42 176.8 118 68.6
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 1.2e-42 176.8 118 68.6
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 1.6e-42 176.4 118 70.3
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.1e-42 176.0 118 69.5
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 2.7e-42 175.6 115 68.7
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 2.7e-42 175.6 118 65.3
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 2.7e-42 175.6 123 67.5
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 2.7e-42 175.6 118 67.8
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 3.5e-42 175.3 118 69.5
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 3.5e-42 175.3 118 69.5
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 3.5e-42 175.3 118 67.8
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 4.6e-42 174.9 118 67.8
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 6.0e-42 174.5 118 68.6
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 6.0e-42 174.5 118 66.9
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 7.8e-42 174.1 118 68.6
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 7.8e-42 174.1 119 68.9
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 7.8e-42 174.1 118 67.8
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 7.8e-42 174.1 118 66.9
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 1.0e-41 173.7 119 68.1
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 1.0e-41 173.7 118 65.3
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 1.3e-41 173.3 119 68.9
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.3e-41 173.3 118 68.6
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.7e-41 172.9 120 70.8
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 2.3e-41 172.6 119 68.1
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 2.3e-41 172.6 118 66.9
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 2.3e-41 172.6 118 66.1
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 1.5e-40 169.9 118 65.3
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 1.5e-40 169.9 119 65.5
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 1.5e-40 169.9 118 64.4
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.9e-40 169.5 120 67.5
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 1.9e-40 169.5 120 67.5
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 1.9e-40 169.5 118 65.3
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 1.9e-40 169.5 118 67.8
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 2.5e-40 169.1 118 66.9
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 2.5e-40 169.1 115 67.8
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 4.3e-40 168.3 118 66.9
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 4.3e-40 168.3 118 65.3
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 7.3e-40 167.5 119 64.7
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 7.3e-40 167.5 119 66.4
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 9.5e-40 167.2 120 66.7
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 1.2e-39 166.8 120 67.5
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 1.2e-39 166.8 139 56.1
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 1.6e-39 166.4 118 66.1
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 1.6e-39 166.4 111 69.4
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 2.1e-39 166.0 119 62.2
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 3.6e-39 165.2 118 61.9
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 3.6e-39 165.2 120 65.8
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 4.7e-39 164.9 121 66.1
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 4.7e-39 164.9 121 66.1
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 4.7e-39 164.9 121 66.1
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 4.7e-39 164.9 118 65.3
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 4.7e-39 164.9 111 67.6
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.1e-38 163.7 120 65.8
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 1.4e-38 163.3 121 65.3
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 1.4e-38 163.3 111 66.7
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 1.8e-38 162.9 120 64.2
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 3.1e-38 162.2 120 65.0
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 3.1e-38 162.2 120 65.0
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 4.0e-38 161.8 125 59.2
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 4.0e-38 161.8 120 63.3
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 4.0e-38 161.8 119 66.4
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 5.2e-38 161.4 120 65.0
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 5.2e-38 161.4 121 63.6
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 8.9e-38 160.6 120 63.3
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 8.9e-38 160.6 121 63.6
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 1.2e-37 160.2 118 63.6
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 1.2e-37 160.2 118 62.7
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 1.2e-37 160.2 119 60.5
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.5e-37 159.8 120 63.3
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 2.0e-37 159.5 123 60.2
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 2.0e-37 159.5 123 60.2
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 3.4e-37 158.7 104 67.3
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 4.4e-37 158.3 119 65.5
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 4.4e-37 158.3 120 62.5
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 7.5e-37 157.5 120 64.2
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 1.7e-36 156.4 120 63.3
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 1.7e-36 156.4 120 60.0
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 1.7e-36 156.4 121 61.2
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.7e-36 156.4 117 64.1
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 1.7e-36 156.4 118 60.2
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 2.2e-36 156.0 122 59.8
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 2.2e-36 156.0 122 59.8
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 2.2e-36 156.0 122 59.8
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 2.9e-36 155.6 119 63.0
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 3.7e-36 155.2 118 59.3
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 3.7e-36 155.2 118 59.3
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 4.9e-36 154.8 108 63.0
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 4.9e-36 154.8 118 58.5
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 8.3e-36 154.1 117 63.2
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 8.3e-36 154.1 117 63.2
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 8.3e-36 154.1 118 58.5
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 1.9e-35 152.9 117 63.2
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 3.2e-35 152.1 118 59.3
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 5.4e-35 151.4 118 57.6
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 5.4e-35 151.4 123 56.9
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 7.1e-35 151.0 124 60.5
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 9.2e-35 150.6 118 58.5
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 1.6e-34 149.8 120 58.3
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 2.1e-34 149.4 118 54.2
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 3.5e-34 148.7 105 63.8
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 6.0e-34 147.9 118 57.6
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 1.0e-33 147.1 113 61.1
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.0e-33 145.6 107 63.6
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.1e-32 143.7 113 61.1
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 1.9e-32 142.9 115 60.0
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 1.8e-30 136.3 119 54.6
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 2.9e-28 129.0 119 55.5
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 7.1e-27 124.4 127 47.2
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 2.7e-26 122.5 127 47.2
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 8.7e-25 117.5 118 46.6
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 1.1e-24 117.1 83 56.6
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 1.5e-24 116.7 121 47.9
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 5.6e-24 114.8 92 60.9
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 1.7e-20 103.2 114 48.2
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 3.2e-19 99.0 128 41.4
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 3.5e-18 95.5 116 48.3
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 6.0e-18 94.7 131 42.7
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 2.5e-16 89.4 108 43.5
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 4.3e-16 88.6 59 61.0
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 1.1e-14 84.0 68 54.4
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 1.5e-13 80.1 64 56.2
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.8e-12 75.5 53 62.3
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 8.1e-07 57.8 39 56.4


User provided reference genes

Program Settings