Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.9e-122 442.6 227 100.0
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 1.2e-108 396.7 227 86.3
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.1e-106 390.2 227 86.3
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.4e-106 389.8 227 85.9
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 1.9e-106 389.4 226 87.6
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 2.4e-106 389.0 227 85.5
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 4.1e-106 388.3 227 86.8
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 4.1e-106 388.3 227 85.5
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.4e-106 387.9 227 85.0
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 5.4e-106 387.9 227 86.3
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 5.4e-106 387.9 227 85.0
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 7.1e-106 387.5 227 85.0
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 2.1e-105 386.0 227 85.5
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 4.6e-105 384.8 227 85.5
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 6.0e-105 384.4 227 84.6
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 7.8e-105 384.0 227 85.9
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 7.8e-105 384.0 227 85.0
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.3e-104 382.5 227 85.5
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 3.9e-104 381.7 227 84.6
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 6.6e-104 380.9 227 84.1
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 85.0
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 85.0
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 1.1e-103 380.2 227 84.1
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.1e-103 380.2 227 82.8
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.1e-103 380.2 216 87.5
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 1.9e-103 379.4 227 83.7
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.9e-103 379.4 227 83.7
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 1.9e-103 379.4 227 83.7
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 83.3
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.5e-103 379.0 219 86.8
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 3.3e-103 378.6 228 84.6
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 4.3e-103 378.3 229 83.0
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 7.3e-103 377.5 227 83.7
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 9.6e-103 377.1 227 82.8
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 1.2e-102 376.7 228 83.8
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.2e-102 376.7 227 82.8
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.6e-102 376.3 227 84.6
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 3.6e-102 375.2 227 80.6
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 4.7e-102 374.8 222 83.3
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 4.7e-102 374.8 227 81.9
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 83.3
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 1.4e-101 373.2 227 82.8
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 1.4e-101 373.2 227 82.8
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.4e-101 373.2 227 81.1
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.4e-101 373.2 229 83.4
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 1.8e-101 372.9 229 82.1
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 3.1e-101 372.1 227 82.4
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 3.1e-101 372.1 228 82.9
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 4.0e-101 371.7 227 82.8
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 4.0e-101 371.7 227 80.2
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 5.2e-101 371.3 217 85.7
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 5.2e-101 371.3 227 82.4
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 6.8e-101 370.9 217 85.3
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 6.8e-101 370.9 222 82.9
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 1.2e-100 370.2 227 80.2
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 1.2e-100 370.2 227 81.1
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 2.0e-100 369.4 224 82.6
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.0e-100 369.4 217 84.8
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.0e-100 369.4 228 82.5
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 2.0e-100 369.4 228 82.5
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 2.6e-100 369.0 222 82.4
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 3.4e-100 368.6 217 84.3
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 4.4e-100 368.2 224 82.6
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 4.4e-100 368.2 226 80.5
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 5.8e-100 367.9 215 83.7
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 5.8e-100 367.9 225 81.8
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 7.6e-100 367.5 216 85.6
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 7.6e-100 367.5 222 82.0
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 9.9e-100 367.1 233 79.8
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 1.3e-99 366.7 227 80.2
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 1.7e-99 366.3 227 81.9
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 2.2e-99 365.9 224 82.1
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.2e-99 365.9 227 81.1
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 2.9e-99 365.5 227 80.2
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 2.9e-99 365.5 214 84.1
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 4.9e-99 364.8 227 79.7
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 6.4e-99 364.4 227 81.1
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.2e-98 362.1 227 79.7
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 3.2e-98 362.1 227 79.7
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 7.1e-98 360.9 225 80.4
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.2e-97 360.1 227 79.3
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 1.6e-97 359.8 219 81.7
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 1.6e-97 359.8 227 78.9
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 2.1e-97 359.4 224 80.8
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.1e-97 359.4 227 79.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.7e-97 359.0 218 83.5
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 2.7e-97 359.0 227 77.5
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 7.8e-97 357.5 220 81.4
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.3e-96 356.7 214 82.2
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 2.3e-96 355.9 214 83.6
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 3.0e-96 355.5 207 84.5
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 3.0e-96 355.5 206 85.9
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 3.0e-96 355.5 228 79.8
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 3.0e-96 355.5 227 79.3
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 8.7e-96 354.0 214 79.9
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.1e-95 353.6 214 81.3
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 4.3e-95 351.7 219 80.4
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.3e-94 350.1 206 84.5
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 1.3e-94 350.1 214 82.2
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 1.6e-94 349.7 204 85.3
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 1.6e-94 349.7 213 81.7
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 6.2e-94 347.8 215 79.5
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 1.1e-93 347.1 214 81.3
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.4e-93 346.7 214 80.8
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 4.0e-93 345.1 205 82.4
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 4.0e-93 345.1 227 77.1
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 9.0e-93 344.0 225 78.2
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 1.2e-92 343.6 265 67.5
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 9.9e-92 340.5 215 78.6
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 9.9e-92 340.5 214 78.0
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.3e-91 340.1 210 82.9
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 2.4e-90 335.9 227 76.7
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 4.3e-87 325.1 214 77.1
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.4e-85 320.1 195 81.0
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 3.1e-85 318.9 190 83.2
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 6.9e-85 317.8 227 72.2
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.0e-84 316.2 212 75.5
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.3e-83 313.5 191 80.1
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 3.9e-80 302.0 178 86.0
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 2.8e-78 295.8 214 68.7
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.8e-78 295.8 191 76.4
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 1.1e-74 283.9 164 86.6
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 5.5e-74 281.6 224 64.7
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 1.2e-73 280.4 222 65.8
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.0e-72 277.3 229 65.9
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 4.3e-71 271.9 193 75.1
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.3e-70 270.4 164 82.3
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 1.1e-69 267.3 227 64.8
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 9.0e-69 264.2 197 72.1
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 4.5e-68 261.9 209 65.1
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 8.4e-67 257.7 160 79.4
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 8.7e-64 247.7 150 80.7
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 1.9e-63 246.5 153 79.1
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.8e-61 240.0 237 53.2
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 1.7e-59 233.4 164 73.2
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 8.8e-56 221.1 215 53.0
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 4.2e-50 202.2 131 74.0
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 7.2e-50 201.4 201 55.7
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 1.4e-40 170.6 110 77.3
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 1.4e-40 170.6 99 81.8
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 7.0e-37 158.3 115 68.7
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 5.7e-31 138.7 109 67.9
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.4e-29 134.0 87 77.0
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 1.8e-29 133.7 92 67.4
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 9.1e-29 131.3 135 54.8
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.8e-24 117.1 113 59.3
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.3e-18 96.3 51 92.2
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 4.3e-18 95.9 75 62.7
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 4.0e-16 89.4 97 52.6
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 8.3e-14 81.6 70 64.3
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 1.6e-12 77.4 114 41.2
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 4.6e-12 75.9 68 57.4
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 3.0e-11 73.2 208 27.9
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 8.9e-08 61.6 63 55.6


User provided reference genes

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