Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 9.5e-215 750.0 398 100.0
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 3.6e-97 359.4 407 56.8
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 4.0e-96 355.9 407 56.8
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 6.8e-96 355.1 421 55.6
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.2e-95 354.4 426 52.1
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 3.4e-95 352.8 429 51.0
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 5.1e-91 339.0 433 51.5
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 6.6e-91 338.6 439 51.0
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 9.5e-90 334.7 411 53.5
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.1e-89 333.6 411 53.5
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 4.7e-89 332.4 403 53.3
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.8e-88 330.5 432 50.0
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.5e-87 327.4 406 51.7
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 4.1e-85 319.3 406 51.5
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 4.1e-85 319.3 403 50.1
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 9.2e-85 318.2 401 50.6
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.7e-84 316.6 419 51.3
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 1.3e-83 314.3 409 48.4
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 2.3e-83 313.5 408 49.3
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 3.0e-83 313.2 408 52.0
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.9e-82 310.5 395 50.4
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.9e-82 310.5 407 49.9
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.3e-82 309.7 421 49.9
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 7.3e-82 308.5 406 50.0
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.1e-81 307.0 408 49.5
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 2.1e-81 307.0 412 49.0
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.1e-80 304.7 407 49.1
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 4.0e-80 302.8 404 48.3
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.2e-79 301.2 409 48.9
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 3.4e-79 299.7 438 44.7
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 5.8e-79 298.9 421 48.7
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.9e-78 296.6 407 48.4
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.9e-78 296.6 405 47.4
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 3.8e-78 296.2 414 49.3
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 3.8e-78 296.2 406 47.8
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 4.9e-78 295.8 403 49.1
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.1e-77 294.7 407 46.9
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.4e-77 294.3 405 48.1
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 1.4e-77 294.3 425 45.6
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 5.4e-77 292.4 410 48.0
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.2e-76 291.2 433 46.2
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.2e-76 291.2 410 47.6
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 1.6e-76 290.8 402 47.0
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 2.1e-76 290.4 427 46.4
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.3e-75 287.7 404 46.3
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.3e-75 287.0 409 47.9
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 1.5e-74 284.3 407 48.2
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 1.9e-74 283.9 363 50.7
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.5e-74 283.5 409 46.7
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 4.3e-74 282.7 406 46.3
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 2.8e-73 280.0 410 46.8
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 8.1e-73 278.5 414 45.4
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 8.1e-73 278.5 414 45.4
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 4.0e-72 276.2 400 44.8
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 6.9e-72 275.4 418 44.7
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 7.6e-71 271.9 408 43.6
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 9.9e-71 271.6 412 44.7
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 9.9e-71 271.6 404 44.6
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 9.9e-71 271.6 410 45.4
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.7e-70 270.8 431 44.3
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 4.9e-70 269.2 405 45.9
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 8.4e-70 268.5 411 45.3
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 4.2e-69 266.2 413 44.6
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 2.1e-68 263.8 409 46.2
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.5e-68 263.1 415 44.3
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 7.9e-68 261.9 394 47.5
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 7.9e-68 261.9 417 42.9
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.0e-67 261.5 393 47.6
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 6.6e-67 258.8 405 46.4
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 8.7e-67 258.5 413 44.1
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.5e-66 257.7 416 43.8
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 9.6e-66 255.0 408 45.8
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 2.1e-65 253.8 345 55.1
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.8e-65 253.4 400 44.5
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 6.2e-65 252.3 399 43.9
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.8e-64 250.8 398 44.2
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 5.3e-64 249.2 368 44.8
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 5.8e-63 245.7 390 46.2
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.3e-62 244.6 410 41.7
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 7.1e-61 238.8 432 40.0
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 9.3e-61 238.4 426 40.1
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 2.1e-60 237.3 419 42.7
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 3.5e-60 236.5 404 43.6
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 4.6e-60 236.1 416 40.4
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 5.1e-59 232.6 266 53.8
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 8.7e-59 231.9 422 42.2
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 2.1e-57 227.3 406 43.6
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.8e-56 224.2 322 47.2
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 4.0e-56 223.0 426 38.7
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 5.3e-56 222.6 419 38.4
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 6.9e-56 222.2 396 43.4
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 3.4e-55 219.9 420 39.0
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 3.4e-55 219.9 420 39.0
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.7e-54 217.6 424 39.2
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.7e-54 217.6 401 39.7
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 2.2e-54 217.2 428 38.6
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 2.2e-54 217.2 421 39.7
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 2.2e-54 217.2 421 37.3
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.2e-54 217.2 265 50.2
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 4.9e-54 216.1 427 38.6
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 4.9e-54 216.1 401 39.2
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.1e-53 214.9 420 38.3
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 2.5e-53 213.8 420 38.1
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 3.2e-53 213.4 421 38.5
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 7.1e-53 212.2 340 44.4
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 3.7e-49 199.9 422 37.4
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 8.2e-49 198.7 409 40.8
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.1e-48 198.4 425 37.4
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.1e-48 198.4 422 37.4
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 3.2e-45 186.8 274 50.7
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 1.2e-44 184.9 305 42.6
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 4.6e-44 183.0 419 35.1
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 1.0e-43 181.8 419 35.3
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 6.7e-43 179.1 419 34.8
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 1.9e-42 177.6 407 34.4
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 4.1e-40 169.9 243 44.9
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 5.3e-40 169.5 437 32.5
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 5.0e-38 162.9 245 42.4
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.5e-37 160.6 242 43.4
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 9.4e-37 158.7 251 43.0
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 2.1e-36 157.5 254 40.2
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 2.7e-36 157.1 252 45.6
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 4.6e-36 156.4 217 46.1
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 6.1e-36 156.0 242 42.1
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 7.9e-36 155.6 247 41.3
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 2.3e-35 154.1 243 43.2
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.1e-34 151.8 230 43.9
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.5e-34 151.4 252 41.7
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 4.3e-34 149.8 253 39.9
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 5.7e-34 149.4 226 40.7
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.3e-33 148.3 251 41.0
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.3e-33 148.3 245 41.2
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 2.8e-33 147.1 242 40.1
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 4.8e-33 146.4 240 41.2
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 4.8e-33 146.4 405 32.8
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.1e-32 143.7 243 39.1
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 4.1e-32 143.3 431 31.8
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 1.5e-31 141.4 208 45.7
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 2.6e-31 140.6 404 30.9
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 4.5e-31 139.8 250 38.8
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 7.7e-31 139.0 395 31.1
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 1.3e-30 138.3 248 39.5
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 8.5e-30 135.6 250 40.8
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 8.5e-30 135.6 227 41.0
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.1e-29 135.2 223 40.8
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.5e-29 134.0 232 38.8
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.5e-29 134.0 246 39.0
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.6e-28 131.3 439 29.8
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 1.6e-28 131.3 218 41.3
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.6e-28 130.2 242 37.2
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 4.7e-28 129.8 377 34.0
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 4.7e-28 129.8 256 36.3
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.4e-27 128.3 244 35.2
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 3.0e-27 127.1 254 38.2
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 4.4e-26 123.2 217 39.2
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.3e-19 100.9 225 37.3
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 4.0e-19 100.1 90 50.0
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.6e-18 97.4 170 44.1
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.1e-16 92.0 125 48.8
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.1e-16 90.1 145 39.3
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.7e-15 87.4 144 38.2
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 2.7e-15 87.4 144 38.2
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.5e-15 86.7 133 47.4
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.7e-14 84.7 149 38.3
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 8.5e-14 82.4 243 34.2
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.2e-12 78.6 116 44.0
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 2.1e-12 77.8 53 67.9
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.5e-10 71.6 51 64.7
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 7.0e-08 62.8 103 44.7


User provided reference genes

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