Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 3.8e-221 771.2 380 100.0
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 1.5e-172 609.8 381 78.0
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 9.5e-172 607.1 379 78.6
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 8.0e-171 604.0 379 77.6
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.3e-170 602.4 381 78.7
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 5.2e-170 601.3 379 77.8
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 6.8e-170 600.9 381 78.7
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.2e-169 600.1 379 79.2
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 2.0e-169 599.4 382 78.8
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 4.9e-168 594.7 379 78.1
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 8.3e-168 594.0 381 78.0
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 7.0e-167 590.9 379 76.8
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 9.2e-167 590.5 379 77.6
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 1.2e-166 590.1 382 77.2
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.6e-166 589.7 380 77.4
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.0e-166 589.3 378 75.9
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 4.6e-166 588.2 381 75.9
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 6.0e-166 587.8 404 73.5
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 6.0e-166 587.8 380 76.8
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 7.8e-166 587.4 344 82.3
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 1.3e-165 586.6 379 77.0
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 3.0e-165 585.5 382 77.2
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 5.0e-165 584.7 378 76.2
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 8.6e-165 583.9 401 73.1
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.1e-164 583.6 378 76.7
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 1.9e-164 582.8 379 75.2
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.3e-164 582.0 379 75.2
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.3e-164 582.0 379 75.2
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 3.3e-164 582.0 381 76.1
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.1e-163 579.3 392 72.7
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 2.1e-163 579.3 382 76.4
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 2.1e-163 579.3 381 76.4
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 3.6e-163 578.6 381 74.8
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 4.7e-163 578.2 379 76.0
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.1e-162 577.0 379 76.8
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.8e-162 576.2 374 73.5
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 2.3e-162 575.9 320 85.0
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 3.1e-162 575.5 380 76.1
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 6.8e-162 574.3 379 74.7
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 8.9e-162 573.9 382 75.1
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 8.9e-162 573.9 379 75.2
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.9e-162 573.9 381 74.8
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 2.0e-161 572.8 378 74.1
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 4.4e-161 571.6 372 76.1
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 9.9e-161 570.5 380 75.3
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.2e-160 569.3 379 74.9
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 2.9e-160 568.9 378 74.1
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 2.1e-158 562.8 378 72.8
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 3.5e-158 562.0 380 72.6
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 3.0e-157 558.9 383 72.3
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 3.0e-157 558.9 379 73.9
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 6.6e-157 557.8 379 73.4
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 3.3e-156 555.4 382 72.8
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 4.3e-156 555.1 318 81.8
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 9.5e-156 553.9 378 72.8
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 2.1e-155 552.7 319 81.5
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 2.1e-155 552.7 397 69.8
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 2.8e-155 552.4 379 72.6
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.8e-155 552.4 382 73.3
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 4.7e-155 551.6 378 71.4
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 1.1e-154 550.4 380 69.5
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 2.4e-154 549.3 381 70.9
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 6.8e-154 547.7 307 83.7
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 8.9e-154 547.4 379 69.4
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.2e-153 547.0 380 69.7
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.0e-153 546.2 381 69.3
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 5.8e-153 544.7 385 71.2
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 7.6e-153 544.3 380 69.7
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 1.7e-152 543.1 381 70.1
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 4.9e-152 541.6 320 78.4
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 6.4e-152 541.2 380 68.7
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 8.4e-152 540.8 402 66.9
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.1e-151 540.4 366 71.9
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 1.1e-151 540.4 345 74.8
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.4e-151 540.0 381 69.3
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 2.4e-151 539.3 323 78.6
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 4.1e-151 538.5 382 69.4
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 1.6e-150 536.6 377 69.8
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.1e-150 536.2 321 78.2
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.7e-150 535.8 319 78.4
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.5e-150 535.4 378 67.7
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 4.6e-150 535.0 378 68.3
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 6.0e-150 534.6 379 72.0
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 1.0e-149 533.9 379 70.2
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.3e-149 533.5 319 79.0
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 2.3e-149 532.7 380 70.0
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-149 532.7 379 69.7
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-149 532.7 380 70.0
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 2.3e-149 532.7 379 69.7
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.0e-149 532.3 319 76.8
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.1e-148 530.4 388 68.8
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 2.5e-148 529.3 350 76.3
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 2.5e-148 529.3 337 75.7
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 2.1e-147 526.2 381 66.9
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 3.6e-147 525.4 387 70.5
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-146 523.9 382 66.8
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.4e-146 523.5 379 67.8
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 5.2e-146 521.5 378 66.1
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 1.2e-145 520.4 322 73.6
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 1.5e-145 520.0 378 66.1
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 2.6e-145 519.2 315 75.6
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 4.4e-145 518.5 378 65.9
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 1.3e-144 516.9 379 68.3
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 2.2e-144 516.2 317 76.3
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 2.2e-144 516.2 380 69.5
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 6.4e-144 514.6 351 73.8
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.4e-143 513.5 381 65.1
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 4.6e-142 508.4 378 65.6
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 2.3e-141 506.1 378 65.3
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 8.7e-141 504.2 377 64.2
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 2.8e-139 499.2 351 72.6
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.4e-138 496.9 315 73.0
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.8e-138 496.5 317 71.9
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 3.1e-138 495.7 319 71.2
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 3.1e-138 495.7 319 72.7
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 3.1e-138 495.7 378 65.1
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 6.9e-138 494.6 336 69.3
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 3.4e-137 492.3 303 72.9
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 8.4e-136 487.6 349 69.9
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 6.0e-134 481.5 326 73.6
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.0e-133 479.2 315 71.1
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 1.1e-132 477.2 374 62.8
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 9.6e-132 474.2 342 66.4
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.3e-131 473.8 325 74.2
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 1.6e-126 456.8 349 67.6
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 8.7e-125 451.1 293 68.6
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 1.1e-124 450.7 241 89.2
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 6.9e-122 441.4 384 60.2
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 2.6e-121 439.5 257 78.2
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 2.6e-121 439.5 257 78.2
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 3.8e-120 435.6 318 62.6
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 3.8e-120 435.6 288 65.6
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 1.4e-114 417.2 327 68.5
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 9.0e-114 414.5 285 71.9
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 1.4e-111 407.1 333 58.9
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 5.5e-111 405.2 326 58.3
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 3.3e-108 396.0 246 79.3
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 1.7e-107 393.7 326 56.4
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 5.5e-103 378.6 259 73.4
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.1e-102 376.7 260 68.5
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 3.6e-102 375.9 298 61.4
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.8e-101 373.6 381 52.2
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 2.1e-94 350.1 196 83.7
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 5.7e-92 342.0 236 74.2
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.8e-91 339.7 196 80.6
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.8e-90 337.0 234 67.9
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 7.2e-87 325.1 226 71.7
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 5.5e-79 298.9 215 72.6
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 2.9e-72 276.6 390 43.6
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 3.8e-72 276.2 358 42.7
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 3.3e-71 273.1 299 48.5
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 3.6e-70 269.6 219 63.0
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 2.6e-68 263.5 323 43.3
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 9.2e-66 255.0 303 44.2
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.5e-52 211.1 153 70.6
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 1.1e-50 204.9 183 61.7
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.3e-48 198.0 112 79.5
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 5.8e-44 182.6 293 37.5
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 8.9e-37 158.7 94 83.0
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 1.2e-36 158.3 94 83.0
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 2.0e-36 157.5 92 83.7
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 2.0e-36 157.5 131 64.1
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 1.3e-35 154.8 131 63.4
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 2.2e-35 154.1 92 81.5
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 1.1e-34 151.8 131 61.8
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 5.1e-32 142.9 98 77.6
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 4.3e-31 139.8 77 83.1
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 4.9e-27 126.3 66 87.9
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 1.9e-26 124.4 321 26.8
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 2.7e-25 120.6 75 72.0
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 8.7e-24 115.5 63 81.0
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 3.3e-23 113.6 133 49.6
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 5.6e-23 112.8 92 66.3
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 7.3e-23 112.5 118 53.4
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 2.5e-15 87.4 62 64.5
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 3.3e-15 87.0 51 78.4
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 2.8e-14 84.0 101 49.5
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 2.4e-13 80.9 266 27.4
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 3.1e-13 80.5 47 78.7
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 4.9e-11 73.2 42 78.6
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 4.2e-10 70.1 46 65.2
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 1.3e-08 65.1 44 63.6
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 1.3e-08 65.1 44 63.6
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 5.7e-07 59.7 34 82.4
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 9.6e-07 58.9 39 61.5


User provided reference genes

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