Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 4.6e-156 555.8 702 100.0
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 9.2e-96 355.5 365 71.0
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 6.0e-95 352.8 247 73.7
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 5.6e-93 346.3 248 70.2
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 1.2e-92 345.1 244 70.9
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 6.4e-89 332.8 244 70.1
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 7.6e-82 309.3 248 66.5
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 2.9e-65 254.2 242 57.0
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 4.9e-65 253.4 238 58.8
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 1.4e-64 251.9 246 54.5
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 1.4e-64 251.9 240 58.8
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 5.6e-61 240.0 243 56.0
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 2.1e-60 238.0 217 58.1
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 2.8e-60 237.7 216 57.9
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 6.2e-60 236.5 220 59.1
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 3.1e-59 234.2 243 54.7
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 5.3e-59 233.4 240 55.4
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 6.9e-59 233.0 224 57.1
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 9.0e-59 232.6 246 54.1
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 2.6e-58 231.1 245 55.9
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 7.6e-58 229.6 241 52.7
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 9.9e-58 229.2 245 51.4
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.7e-57 228.4 238 54.6
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 4.2e-56 223.8 211 57.8
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 7.1e-56 223.0 204 56.4
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 7.1e-56 223.0 195 57.9
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 1.6e-55 221.9 191 58.6
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 2.1e-55 221.5 222 53.6
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 2.1e-55 221.5 232 51.3
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 2.7e-55 221.1 239 53.6
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 6.0e-55 219.9 239 53.1
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 1.0e-54 219.2 214 57.0
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 1.3e-54 218.8 241 51.0
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 1.3e-54 218.8 179 65.4
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 1.8e-54 218.4 230 50.4
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 2.3e-54 218.0 251 48.2
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 3.9e-54 217.2 220 52.3
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 5.1e-54 216.9 232 50.9
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.1e-54 216.9 169 65.7
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 8.7e-54 216.1 195 56.4
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 1.5e-53 215.3 236 51.3
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 1.9e-53 214.9 237 51.9
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 5.6e-53 213.4 218 55.0
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 2.8e-52 211.1 168 63.7
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 3.7e-52 210.7 248 46.8
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 4.8e-52 210.3 190 57.9
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.2e-52 209.9 151 68.9
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 6.2e-52 209.9 151 68.9
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.1e-51 209.1 252 49.6
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 3.1e-51 207.6 228 51.8
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 5.3e-51 206.8 224 52.2
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 5.3e-51 206.8 168 61.9
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 6.9e-51 206.5 233 49.8
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 1.2e-50 205.7 192 57.3
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 4.5e-50 203.8 207 50.7
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 1.0e-49 202.6 246 48.0
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.3e-49 202.2 215 49.8
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 1.7e-49 201.8 168 61.3
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 2.2e-49 201.4 168 61.3
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 2.2e-49 201.4 168 61.3
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 6.5e-49 199.9 158 63.3
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 1.1e-48 199.1 252 47.6
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 1.1e-48 199.1 185 53.5
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 1.4e-48 198.7 234 48.3
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 1.9e-48 198.4 172 57.0
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 3.2e-48 197.6 168 60.7
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 4.2e-48 197.2 193 54.4
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.5e-48 196.8 206 55.3
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 5.5e-48 196.8 243 45.3
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 2.1e-47 194.9 199 54.8
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.5e-47 194.1 217 49.8
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 7.9e-47 193.0 195 54.9
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 1.0e-46 192.6 236 47.5
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 3.9e-46 190.7 168 58.3
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 6.7e-46 189.9 220 50.9
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 1.5e-45 188.7 187 54.5
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.7e-45 186.8 200 54.5
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 7.4e-45 186.4 169 56.2
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.1e-43 182.6 206 51.9
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 1.4e-43 182.2 229 48.0
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 5.9e-42 176.8 225 51.6
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.0e-41 173.7 139 64.7
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 1.1e-40 172.6 120 73.3
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 1.1e-40 172.6 189 49.7
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 6.1e-39 166.8 192 48.4
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 2.3e-38 164.9 184 51.1
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 2.3e-38 164.9 160 55.0
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 3.9e-38 164.1 196 48.5
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 8.8e-38 162.9 197 47.7
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.1e-37 162.5 129 64.3
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 1.5e-37 162.2 176 51.1
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 1.5e-37 162.2 176 51.1
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 2.5e-37 161.4 139 55.4
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 4.3e-37 160.6 129 65.1
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 7.4e-37 159.8 186 46.8
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 2.2e-36 158.3 194 48.5
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 5.3e-35 153.7 107 71.0
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 9.1e-35 152.9 133 57.9
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 2.0e-34 151.8 168 48.2
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 7.7e-34 149.8 136 56.6
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 1.0e-33 149.4 176 47.2
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 2.9e-33 147.9 116 63.8
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.5e-32 144.8 169 50.3
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 3.2e-32 144.4 173 49.1
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 3.2e-32 144.4 126 58.7
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 8.8e-30 136.3 142 51.4
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.1e-29 136.0 151 47.0
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 1.5e-29 135.6 130 54.6
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 4.4e-29 134.0 130 53.8
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 5.7e-29 133.7 131 52.7
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 3.7e-28 131.0 165 44.8
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 3.1e-27 127.9 131 48.9
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 9.1e-27 126.3 127 49.6
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 1.5e-26 125.6 127 49.6
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 7.7e-26 123.2 172 44.8
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 2.1e-23 115.2 125 51.2
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 3.9e-22 110.9 180 41.1
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.2e-18 99.4 132 43.2
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 1.7e-17 95.5 111 49.5
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 2.5e-16 91.7 124 41.9
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 1.3e-12 79.3 62 61.3
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 2.2e-09 68.6 67 53.7
CANSAT54G1800 Cannabis sativa HOM05D006008 ORTHO05D007334 1.6e-07 62.4 39 79.5
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 2.7e-07 61.6 45 68.9


User provided reference genes

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