Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2644 Cannabis sativa HOM05D004197 ORTHO05D004975 2.4e-65 251.9 120 100.0
Cpa.g.sc10.180 Carica papaya HOM05D004197 ORTHO05D004975 6.7e-55 217.2 120 85.8
Duzib212G0574 Durio zibethinus HOM05D004197 ORTHO05D004975 1.1e-54 216.5 120 83.3
Thecc.04G166300 Theobroma cacao HOM05D004197 ORTHO05D004975 4.3e-54 214.5 120 83.3
Hma1.2p1_0307F.1_g119895 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 7.4e-54 213.8 120 83.3
Dinv33200 Davidia involucrata HOM05D004197 ORTHO05D004975 9.7e-54 213.4 119 82.4
PGR142G4086 Punica granatum HOM05D004197 ORTHO05D004975 1.6e-53 212.6 120 83.3
CiPaw.11G096400 Carya illinoinensis HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 80.8
Gohir.A10G143100 Gossypium hirsutum HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 82.5
Gorai.011G136700 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 82.5
Gorai.012G053000 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.2e-53 212.2 120 82.5
Duzib151G0052 Durio zibethinus HOM05D004197 ORTHO05D004975 2.8e-53 211.8 120 81.7
CSS0039414 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 6.3e-53 210.7 120 80.8
CSS0047181 Camellia sinensis var. sinensis HOM05D004197 ORTHO05D004975 6.3e-53 210.7 120 80.8
Gohir.A05G367700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 6.3e-53 210.7 120 81.7
Aa31LG10G13940 Aethionema arabicum HOM05D004197 ORTHO05D004975 8.2e-53 210.3 120 80.8
Gohir.D10G123800 Gossypium hirsutum HOM05D004197 ORTHO05D004975 8.2e-53 210.3 120 81.7
TWI32G1250 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 8.2e-53 210.3 120 81.7
Gohir.D04G047600 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.1e-52 209.9 120 81.7
CARHR170020 Cardamine hirsuta HOM05D004197 ORTHO05D004975 1.4e-52 209.5 120 80.8
Rhsim03G0176800 Rhododendron simsii HOM05D004197 ORTHO05D004975 1.4e-52 209.5 119 81.5
GSVIVG01038138001 Vitis vinifera HOM05D004197 ORTHO05D004975 1.4e-52 209.5 120 81.7
AL5G41720 Arabidopsis lyrata HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 80.8
arahy.Tifrunner.gnm1.ann1.4JR04K Arachis hypogaea HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 80.0
arahy.Tifrunner.gnm1.ann1.5DCW4K Arachis hypogaea HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 80.0
Carub.0005s2637 Capsella rubella HOM05D004197 ORTHO05D004975 1.8e-52 209.1 120 80.8
AT3G59650 Arabidopsis thaliana HOM05D004197 ORTHO05D004975 2.4e-52 208.8 120 80.0
arahy.Tifrunner.gnm1.ann1.E9H45Q Arachis hypogaea HOM05D004197 ORTHO05D004975 2.4e-52 208.8 119 79.8
Prupe.1G206900 Prunus persica HOM05D004197 ORTHO05D004975 3.1e-52 208.4 120 82.5
BcaC07g40496 Brassica carinata HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 80.8
A09p51920 Brassica napus HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 80.8
C08p34650 Brassica napus HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 80.8
BolC8t51067H Brassica oleracea HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 80.8
BraA09t40628Z Brassica rapa HOM05D004197 ORTHO05D004975 4.1e-52 208.0 120 80.8
Aqoxy7G00569 Aquilegia oxysepala HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 80.8
Lalb_Chr04g0253841 Lupinus albus HOM05D004197 ORTHO05D004975 5.3e-52 207.6 120 81.7
Atru.chr12.1293 Acer truncatum HOM05D004197 ORTHO05D004975 9.0e-52 206.8 120 77.5
Nn1g09691 Nelumbo nucifera HOM05D004197 ORTHO05D004975 1.2e-51 206.5 120 78.3
Ca_10539_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 1.5e-51 206.1 120 79.2
CiPaw.12G066300 Carya illinoinensis HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 77.5
Ca_23424_v3 Cicer arietinum L. HOM05D004197 ORTHO05D004975 2.0e-51 205.7 120 80.0
MD08G1230600 Malus domestica HOM05D004197 ORTHO05D004975 2.6e-51 205.3 118 80.5
QL10p055721 Quercus lobata HOM05D004197 ORTHO05D004975 2.6e-51 205.3 119 80.7
Ah.13g073520 Amaranthus hybridus HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 78.3
BcaC08g44998 Brassica carinata HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 79.2
A07p24720 Brassica napus HOM05D000455 ORTHO05D000434 3.4e-51 204.9 120 79.2
C06p26290 Brassica napus HOM05D000455 ORTHO05D000434 3.4e-51 204.9 120 79.2
BolC6t37793H Brassica oleracea HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 79.2
BraA07t30117Z Brassica rapa HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 79.2
MELO3C017759.2 Cucumis melo HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 79.2
CsaV3_4G002820 Cucumis sativus L. HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 78.3
Thhalv10006316m.g Eutrema salsugineum HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 79.2
Sp5g03530 Schrenkiella parvula HOM05D004197 ORTHO05D004975 3.4e-51 204.9 120 79.2
BcaB02g07455 Brassica carinata HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 79.2
Eucgr.G02225 Eucalyptus grandis HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 78.3
HanXRQChr10g0286001 Helianthus annuus HOM05D004197 ORTHO05D004975 4.5e-51 204.5 120 79.2
Atru.chr4.2919 Acer truncatum HOM05D004197 ORTHO05D004975 5.9e-51 204.1 120 76.7
CDE02G1869 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 5.9e-51 204.1 119 77.3
ClCG07G015230 Citrullus lanatus HOM05D004197 ORTHO05D004975 5.9e-51 204.1 120 78.3
FvH4_7g06200 Fragaria vesca HOM05D004197 ORTHO05D004975 7.7e-51 203.8 120 79.2
Lalb_Chr10g0101191 Lupinus albus HOM05D004197 ORTHO05D004975 7.7e-51 203.8 120 78.3
RcHm_v2.0_Chr1g0333831 Rosa chinensis HOM05D004197 ORTHO05D004975 7.7e-51 203.8 120 78.3
Nitab4.5_0000902g0310 Nicotiana tabacum HOM05D004197 ORTHO05D004975 1.0e-50 203.4 120 78.3
Oeu016610.1 Olea europaea HOM05D004197 ORTHO05D004975 1.0e-50 203.4 120 78.3
ECA247G1539 Erigeron canadensis HOM05D004197 ORTHO05D004975 1.3e-50 203.0 120 80.0
Cfa015042 Carpinus fangiana HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 77.5
Peaxi162Scf00196g00222 Petunia axillaris HOM05D004197 ORTHO05D004975 1.7e-50 202.6 120 77.5
ECA240G1468 Erigeron canadensis HOM05D004197 ORTHO05D004975 2.2e-50 202.2 120 79.2
FAN01G1948 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.2e-50 202.2 120 78.3
FAN06G1493 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.2e-50 202.2 120 78.3
Manes.06G021100 Manihot esculenta HOM05D004197 ORTHO05D004975 2.2e-50 202.2 120 79.2
Potri.013G126200 Populus trichocarpa HOM05D004197 ORTHO05D004975 2.2e-50 202.2 120 76.7
CAN.G525.23 Capsicum annuum HOM05D004197 ORTHO05D004975 2.9e-50 201.8 120 77.5
Nitab4.5_0007872g0010 Nicotiana tabacum HOM05D004197 ORTHO05D004975 2.9e-50 201.8 120 77.5
PSO832G1844 Papaver somniferum HOM05D004197 ORTHO05D004975 2.9e-50 201.8 119 77.3
FAN03G3355 Fragaria x ananassa HOM05D004197 ORTHO05D004975 5.0e-50 201.1 120 77.5
Glyma.17G164900 Glycine max HOM05D004197 ORTHO05D004975 5.0e-50 201.1 120 76.7
Lsat_1_v5_gn_5_190681 Lactuca sativa HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 80.0
Lsat_1_v5_gn_6_33001 Lactuca sativa HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 80.0
Phvul.003G238300 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 6.5e-50 200.7 120 75.8
Os03g0207250 Oryza sativa ssp. japonica HOM05D004197 ORTHO05D004975 8.5e-50 200.3 120 76.7
AUR62023799 Chenopodium quinoa HOM05D004197 ORTHO05D004975 1.1e-49 199.9 120 75.8
Solyc04g014390.3 Solanum lycopersicum HOM05D004197 ORTHO05D004975 1.4e-49 199.5 115 80.0
Sopen04g006520 Solanum pennellii HOM05D004197 ORTHO05D004975 1.4e-49 199.5 115 80.0
VMungo0251G3068 Vigna mungo HOM05D004197 ORTHO05D004975 1.4e-49 199.5 120 75.8
MSTRG.27564 Avicennia marina HOM05D004197 ORTHO05D004975 2.5e-49 198.7 120 76.7
Lj1g0017974 Lotus japonicus HOM05D004197 ORTHO05D004975 2.5e-49 198.7 120 75.0
Hund04335 Selenicereus undatus HOM05D004197 ORTHO05D004975 2.5e-49 198.7 120 76.7
SalBow6G6028 Salvia bowleyana HOM05D004197 ORTHO05D004975 3.2e-49 198.4 118 77.1
Zm00001eb400580 Zea mays HOM05D004197 ORTHO05D004975 3.2e-49 198.4 120 76.7
Glyma.05G102000 Glycine max HOM05D004197 ORTHO05D004975 4.2e-49 198.0 120 76.7
PSO017G5565 Papaver somniferum HOM05D004197 ORTHO05D004975 4.2e-49 198.0 119 75.6
PSO675G0737 Papaver somniferum HOM05D004197 ORTHO05D004975 4.2e-49 198.0 119 75.6
Psat1g223520 Pisum sativum HOM05D004197 ORTHO05D004975 4.2e-49 198.0 120 74.2
HPP92_007604 Vanilla planifolia HOM05D004197 ORTHO05D004975 4.2e-49 198.0 120 75.0
Ciclev10022904m.g Citrus clementina HOM05D004197 ORTHO05D004975 5.5e-49 197.6 120 75.8
Sed0002539 Sechium edule HOM05D004197 ORTHO05D004975 5.5e-49 197.6 120 75.8
EL10Ac6g15364 Beta vulgaris HOM05D004197 ORTHO05D004975 7.2e-49 197.2 120 75.0
THA.LOC104804007 Tarenaya hassleriana HOM05D004197 ORTHO05D004975 7.2e-49 197.2 120 74.2
Cc02_g26370 Coffea canephora HOM05D004197 ORTHO05D004975 9.4e-49 196.8 120 75.8
Phvul.010G124900 Phaseolus vulgaris HOM05D004197 ORTHO05D004975 9.4e-49 196.8 111 82.0
Medtr8g022770 Medicago truncatula HOM05D004197 ORTHO05D004975 1.2e-48 196.4 120 74.2
Sp2g07880 Schrenkiella parvula HOM05D004197 ORTHO05D004975 1.2e-48 196.4 120 76.7
TWI34G1638 Tripterygium wilfordii HOM05D004197 ORTHO05D004975 1.2e-48 196.4 144 68.8
PGSC0003DMG401023624 Solanum tuberosum HOM05D004197 ORTHO05D004975 2.1e-48 195.7 115 79.1
ATR0733G162 Amborella trichopoda HOM05D004197 ORTHO05D004975 2.7e-48 195.3 120 73.3
TPR.G16667 Trifolium pratense HOM05D004197 ORTHO05D004975 2.7e-48 195.3 119 73.9
PSO591G0183 Papaver somniferum HOM05D004197 ORTHO05D004975 3.6e-48 194.9 119 74.8
Migut.F01587 Erythranthe guttata HOM05D004197 ORTHO05D004975 6.1e-48 194.1 120 75.8
TAR362G0244 Trochodendron aralioides HOM05D000090 ORTHO05D001584 1.0e-47 193.4 111 81.1
QL04p073242 Quercus lobata HOM05D004197 ORTHO05D004975 2.3e-47 192.2 119 74.8
EL10Ac3g06082 Beta vulgaris HOM05D004197 ORTHO05D004975 3.0e-47 191.8 120 72.5
Psat4g166320 Pisum sativum HOM05D004197 ORTHO05D004975 3.0e-47 191.8 120 70.8
Cc03_g14030 Coffea canephora HOM05D004197 ORTHO05D004975 5.1e-47 191.0 120 75.8
TAR629G0957 Trochodendron aralioides HOM05D004197 ORTHO05D004975 3.3e-46 188.3 110 80.9
unitig_899.g14470 Utricularia gibba HOM05D004197 ORTHO05D004975 3.3e-46 188.3 120 72.5
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 4.3e-46 188.0 110 79.1
Actinidia11444 Actinidia chinensis HOM05D005056 ORTHO05D006487 8.2e-45 183.7 110 76.4
FAN24G1973 Fragaria x ananassa HOM05D004197 ORTHO05D004975 2.2e-42 175.6 110 75.5
FvH4_2g13530 Fragaria vesca HOM05D004197 ORTHO05D004975 5.0e-42 174.5 112 75.0
SGA_v2.0_scaffold49G18240 Striga asiatica HOM05D004197 ORTHO05D004975 3.2e-41 171.8 110 73.6
QL04p093649 Quercus lobata HOM05D004197 ORTHO05D004975 1.6e-40 169.5 111 71.2
TAR493G0004 Trochodendron aralioides HOM05D004197 ORTHO05D004975 1.6e-40 169.5 107 77.6
arahy.Tifrunner.gnm1.ann1.XY21PC Arachis hypogaea HOM05D004197 ORTHO05D004975 3.6e-40 168.3 131 61.8
Mapoly0027s0066 Marchantia polymorpha HOM05D004197 ORTHO05D004975 7.9e-40 167.2 120 67.5
SEGI_18755 Sequoiadendron giganteum HOM05D004197 ORTHO05D004975 1.5e-38 162.9 120 62.5
C04p24770 Brassica napus HOM05D004197 ORTHO05D004975 3.3e-38 161.8 110 72.7
BolC4t23981H Brassica oleracea HOM05D004197 ORTHO05D004975 3.3e-38 161.8 110 72.7
Gorai.004G083000 Gossypium raimondii HOM05D004197 ORTHO05D004975 9.7e-38 160.2 95 78.9
BcaC02g10824 Brassica carinata HOM05D004197 ORTHO05D004975 2.8e-37 158.7 110 71.8
Pp3c1_20100 Physcomitrium patens HOM05D004197 ORTHO05D004975 1.1e-36 156.8 120 60.8
AUR62002389 Chenopodium quinoa HOM05D004197 ORTHO05D004975 3.1e-36 155.2 213 41.8
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 3.1e-36 155.2 95 75.8
Lj3g0000340 Lotus japonicus HOM05D004197 ORTHO05D004975 5.3e-36 154.5 124 61.3
Gohir.D10G075200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.2e-35 153.3 91 80.2
Gohir.D08G078000 Gossypium hirsutum HOM05D004197 ORTHO05D004975 1.5e-35 152.9 93 77.4
Peaxi162Scf00474g00723 Petunia axillaris HOM05D004197 ORTHO05D004975 2.6e-35 152.1 120 63.3
Gohir.D02G135200 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.5e-35 151.8 91 79.1
Atru.chr12.1301 Acer truncatum HOM05D004197 ORTHO05D004975 2.2e-34 149.1 91 73.6
arahy.Tifrunner.gnm1.ann1.60591L Arachis hypogaea HOM05D004197 ORTHO05D004975 3.8e-34 148.3 136 60.3
Gorai.011G081000 Gossypium raimondii HOM05D004197 ORTHO05D004975 3.8e-34 148.3 91 78.0
Atru.chr12.1273 Acer truncatum HOM05D004197 ORTHO05D004975 5.0e-34 147.9 93 72.0
HanXRQChr09g0264591 Helianthus annuus HOM05D004197 ORTHO05D004975 6.5e-34 147.5 94 75.5
Gorai.005G151300 Gossypium raimondii HOM05D004197 ORTHO05D004975 8.5e-34 147.1 91 75.8
Sabra13G0105500 Salix brachista HOM05D004197 ORTHO05D004975 8.5e-34 147.1 169 48.5
SHI24203 Sapria himalayana HOM05D004197 ORTHO05D004975 8.5e-34 147.1 133 54.9
Rhsim02G0084000 Rhododendron simsii HOM05D004197 ORTHO05D004975 3.2e-33 145.2 86 76.7
Zm00001eb007240 Zea mays HOM05D004197 ORTHO05D004975 4.7e-32 141.4 91 72.5
DCAR_029674 Daucus carota HOM05D004197 ORTHO05D004975 3.0e-31 138.7 91 72.5
SalBow2G3321 Salvia bowleyana HOM05D004197 ORTHO05D004975 3.9e-31 138.3 86 76.7
DCAR_009572 Daucus carota HOM05D004197 ORTHO05D004975 1.5e-30 136.3 91 71.4
CARHR099320 Cardamine hirsuta HOM05D004197 ORTHO05D004975 9.7e-30 133.7 84 72.6
unitig_736.g22525 Utricularia gibba HOM05D000398 ORTHO05D000551 2.4e-28 129.0 86 68.6
Gohir.D08G220700 Gossypium hirsutum HOM05D004197 ORTHO05D004975 3.1e-28 128.6 77 79.2
TPR.G31074 Trifolium pratense HOM05D004197 ORTHO05D006502 1.2e-27 126.7 94 62.8
Hma1.2p1_0150F.1_g066800 Hydrangea macrophylla HOM05D004197 ORTHO05D004975 2.9e-26 122.1 62 90.3
COL.COLO4_08144 Corchorus olitorius HOM05D004197 ORTHO05D004975 5.0e-26 121.3 62 88.7
SMO347G0376 Selaginella moellendorffii HOM05D004197 ORTHO05D004975 4.2e-25 118.2 114 47.4
vmacro16589 Vaccinium macrocarpon HOM05D004197 ORTHO05D004975 7.2e-25 117.5 62 87.1
arahy.Tifrunner.gnm1.ann1.GGUP18 Arachis hypogaea HOM05D004197 ORTHO05D004975 1.6e-24 116.3 62 85.5
Lsat_1_v5_gn_6_23540 Lactuca sativa HOM05D004197 ORTHO05D004975 2.1e-24 115.9 95 62.1
Glyma.07G044001 Glycine max HOM05D004197 ORTHO05D004975 3.3e-22 108.6 91 61.5
Cre06.g270650 Chlamydomonas reinhardtii HOM05D004197 ORTHO05D004975 9.7e-22 107.1 110 45.5
Gorai.004G076200 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.4e-20 102.4 120 46.7
arahy.Tifrunner.gnm1.ann1.HJ8Q1I Arachis hypogaea HOM05D004197 ORTHO05D004975 6.5e-18 94.4 56 75.0
MCO09G643 Micromonas commoda HOM05D004197 ORTHO05D004975 2.7e-16 89.0 115 40.0
Lsat_1_v5_gn_2_131080 Lactuca sativa HOM05D004197 ORTHO05D004975 3.6e-16 88.6 82 59.8
Gohir.D04G172540 Gossypium hirsutum HOM05D004197 ORTHO05D004975 4.0e-15 85.1 62 62.9
Gorai.012G161800 Gossypium raimondii HOM05D004197 ORTHO05D004975 2.0e-14 82.8 62 62.9
Gorai.004G234500 Gossypium raimondii HOM05D004197 ORTHO05D004975 1.6e-11 73.2 57 61.4
Actinidia27110 Actinidia chinensis HOM05D004197 ORTHO05D004975 1.3e-10 70.1 44 77.3
Thecc.10G088100 Theobroma cacao HOM05D004197 ORTHO05D004975 1.2e-06 57.0 38 65.8


User provided reference genes

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