Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 4.7e-171 604.4 287 100.0
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 1.4e-167 592.8 292 97.3
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 5.7e-153 544.3 285 89.1
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 2.8e-152 542.0 285 87.7
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 7.0e-151 537.3 285 88.8
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 1.2e-150 536.6 288 86.8
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 3.5e-150 535.0 285 87.7
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 7.7e-150 533.9 285 86.7
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 1.0e-149 533.5 287 86.1
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 5.0e-149 531.2 285 86.0
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 6.5e-149 530.8 285 86.3
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.5e-148 529.6 287 86.1
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 1.9e-148 529.3 285 88.1
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 5.5e-148 527.7 285 87.7
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 5.5e-148 527.7 285 87.7
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 9.4e-148 526.9 283 85.9
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 2.1e-147 525.8 287 85.7
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 3.6e-147 525.0 285 85.6
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 3.6e-147 525.0 285 86.0
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 8.0e-147 523.9 285 86.3
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.4e-146 523.1 286 85.3
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 1.4e-146 523.1 285 84.9
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 1.8e-146 522.7 285 84.9
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 1.8e-146 522.7 285 86.0
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 2.3e-146 522.3 285 86.0
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 2.3e-146 522.3 285 86.0
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 3.0e-146 521.9 285 85.3
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 3.0e-146 521.9 285 87.0
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 3.0e-146 521.9 283 85.2
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 3.0e-146 521.9 285 84.6
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 4.0e-146 521.5 285 86.0
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 5.2e-146 521.2 285 85.3
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 5.2e-146 521.2 285 84.2
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 6.8e-146 520.8 285 84.9
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 6.8e-146 520.8 286 85.3
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 8.8e-146 520.4 285 84.9
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 8.8e-146 520.4 288 84.4
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 1.5e-145 519.6 282 84.4
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 1.5e-145 519.6 285 84.2
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 1.5e-145 519.6 285 85.3
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 2.0e-145 519.2 285 84.9
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 2.0e-145 519.2 287 82.6
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 2.0e-145 519.2 285 83.9
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 2.6e-145 518.8 285 84.9
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 2.6e-145 518.8 285 83.9
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 2.6e-145 518.8 285 83.9
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 3.4e-145 518.5 285 84.9
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 5.7e-145 517.7 287 82.9
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 5.7e-145 517.7 285 85.3
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 1.3e-144 516.5 282 85.5
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 2.8e-144 515.4 288 84.0
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 3.7e-144 515.0 285 83.5
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 4.8e-144 514.6 284 83.8
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 6.3e-144 514.2 285 82.8
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 8.3e-144 513.8 287 82.2
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 2.4e-143 512.3 288 83.7
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 4.1e-143 511.5 285 82.5
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 4.1e-143 511.5 285 83.9
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 9.1e-143 510.4 284 82.0
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.2e-142 510.0 302 80.5
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 1.6e-142 509.6 283 83.0
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 2.0e-142 509.2 282 83.7
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 2.0e-142 509.2 285 83.5
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 2.7e-142 508.8 284 84.9
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 3.5e-142 508.4 284 82.4
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 4.5e-142 508.1 280 83.9
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 5.0e-141 504.6 283 83.0
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 1.1e-140 503.4 286 82.2
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 1.5e-140 503.1 280 83.9
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 5.5e-140 501.1 285 82.5
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 7.2e-140 500.7 285 81.1
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 7.2e-140 500.7 284 83.5
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 1.2e-139 500.0 282 83.3
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 1.6e-139 499.6 273 84.6
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 3.6e-139 498.4 285 80.4
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 1.0e-138 496.9 285 80.7
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 8.9e-138 493.8 282 82.3
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 1.5e-137 493.0 278 82.4
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 1.5e-137 493.0 285 82.5
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 2.6e-137 492.3 285 79.6
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 2.6e-137 492.3 285 81.1
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 4.4e-137 491.5 285 80.0
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 5.7e-137 491.1 285 80.4
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 7.5e-137 490.7 298 77.9
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 1.3e-136 490.0 272 83.8
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 3.7e-136 488.4 285 79.3
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 1.1e-135 486.9 285 78.6
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 1.1e-135 486.9 285 79.3
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 1.1e-135 486.9 285 78.6
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 1.8e-135 486.1 285 78.9
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 3.1e-135 485.3 285 80.0
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 3.1e-135 485.3 285 78.2
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 3.1e-135 485.3 280 79.6
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 4.1e-135 485.0 285 80.0
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 9.2e-135 483.8 286 80.1
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 1.2e-134 483.4 286 79.7
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 1.2e-134 483.4 286 80.1
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 1.2e-134 483.4 286 80.1
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 4.5e-134 481.5 282 78.0
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.3e-133 479.9 285 79.6
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 6.6e-133 477.6 287 78.4
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 4.3e-132 474.9 330 70.3
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 7.3e-132 474.2 287 76.3
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 1.6e-131 473.0 285 77.9
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 1.1e-127 460.3 276 76.4
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 1.1e-127 460.3 280 75.7
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 1.6e-126 456.4 286 73.8
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 6.6e-125 451.1 247 83.8
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 8.6e-125 450.7 277 73.6
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.9e-124 449.5 274 78.1
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 8.0e-123 444.1 235 87.7
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 2.2e-120 436.0 286 74.5
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 3.9e-117 425.2 282 68.8
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 5.1e-117 424.9 240 81.2
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 1.1e-114 417.2 226 87.6
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 2.3e-109 399.4 281 66.9
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 3.6e-107 392.1 279 67.4
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 1.9e-103 379.8 278 65.5
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 4.2e-103 378.6 197 88.3
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 2.2e-96 356.3 220 75.0
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 9.6e-92 340.9 283 58.7
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 6.2e-91 338.2 288 60.1
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 3.2e-87 325.9 273 61.2
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 4.5e-81 305.4 171 83.0
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 1.7e-80 303.5 167 85.6
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 1.3e-75 287.3 259 52.9
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 7.4e-68 261.5 274 48.2
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 1.5e-65 253.8 284 48.2
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 3.4e-65 252.7 278 48.2
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 1.6e-62 243.8 232 53.0
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 1.0e-53 214.5 114 83.3
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 6.1e-46 188.7 103 82.5
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 5.2e-21 105.9 79 64.6
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 3.9e-16 89.7 79 57.0
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 4.7e-14 82.8 69 58.0
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 5.8e-12 75.9 56 60.7
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 4.7e-06 56.2 39 71.8


User provided reference genes

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